Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30330
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 178 KFNKIK*TYMRAIEVTIFLLQCTLCATLPPLHQNLANL 65
           +FN  +  Y+ A+ V +     T    LPP+++ + +L
Sbjct: 130 RFNVNEQMYLYALSVAVIHRPDTKLMKLPPMYEVMPHL 167


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 178 KFNKIK*TYMRAIEVTIFLLQCTLCATLPPLHQNLANL 65
           +FN  +  Y+ A+ V +     T    LPP+++ + +L
Sbjct: 130 RFNVNEQMYLYALSVAVIHRPDTKLMKLPPMYEVMPHL 167


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 336 PSSLSFSNSATPWI 377
           PS + FSNS+  W+
Sbjct: 37  PSRVEFSNSSGAWL 50


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 336 PSSLSFSNSATPWI 377
           PS + FSNS+  W+
Sbjct: 37  PSRVEFSNSSGAWL 50


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 90  HYTKTLPTYVLLTIL 46
           HY+    TYV LTI+
Sbjct: 242 HYSMNSTTYVTLTIV 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,714
Number of Sequences: 438
Number of extensions: 2602
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)