Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30330
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT) id...    30   1.0  
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ...    28   3.1  
At4g27320.1 68417.m03920 universal stress protein (USP) family p...    28   3.1  
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    27   7.1  

>At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT)
           identical to SP|Q9LDH0
          Length = 534

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 141 IARIYVYFILLNFLFAIIYF 200
           I +I++Y +LLN LF IIYF
Sbjct: 8   ILKIFLYMLLLNSLFLIIYF 27


>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 272

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 84  CSGGNVAHSVHCNKKIVTSIARIYVYFILLNFLFAIIYF*ACVFRRKLKKREEFVK 251
           CSGG+   S    K+ +  I    +  ++L   ++ +Y    +FRR LK+R + +K
Sbjct: 209 CSGGSKPLSQKPKKRSIVYIIFSIIVLVVLLLYYSFVY----LFRRGLKRRSQDLK 260


>At4g27320.1 68417.m03920 universal stress protein (USP) family
           protein low similarity to ER6 protein [Lycopersicon
           esculentum] GI:5669654, early nodulin ENOD18 [Vicia
           faba] GI:11602747; contains Pfam profile PF00582:
           universal stress protein family
          Length = 260

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 439 LRYVDDEE-PTPSTSSGATIDLIQGVALLENDSDDGD 332
           +RY DD + P P  + GAT + I  V    +D DD D
Sbjct: 203 VRYPDDRDGPAPPGNVGATREAIVTVKSRRDDDDDDD 239


>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 460 TPVTTATLRYVDDEEPTPSTSSGATIDLIQGVAL 359
           +PVT +T+    ++E T   SSG   +  QGVAL
Sbjct: 167 SPVTQSTVPDSTNQESTVQRSSGQQTEHFQGVAL 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,231,417
Number of Sequences: 28952
Number of extensions: 160527
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)