Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30329
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   3.0  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.9  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   5.2  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   6.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   6.9  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   6.9  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    25   9.1  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 84  KSEQKLKMSPDINQIGTQKVRNVSSGEVLELKSFWEQQNVAIVFFRRW 227
           K +Q  +   ++ Q   Q  +  S G  LEL  F+E+    ++  +RW
Sbjct: 101 KIKQSYETPDELQQAAKQFYQLASKGIGLELALFYEEYGSLLIRMQRW 148


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -1

Query: 283 ENRRY--FAQLLAQSLQNMQPQR--RKNTIATFCCSQKLFNSKTSPLET-FLTFCVP 128
           + R+Y  FA+ L+ +L  +  +   R+   A+ CC QKL   K   L T FLT  +P
Sbjct: 158 DKRQYLLFARALSSALDIIPNKNSSRRLQFASLCCVQKLICPKQYRLPTEFLTTFLP 214


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 78  NHKSEQKLKMSPDINQIGTQKVRNVSSGEVLEL 176
           NHK+   LKM+   N++ T  + ++S  E +E+
Sbjct: 662 NHKNNHPLKMTDLSNEVETMALEDMSEREEVEV 694


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 167 NFATGNVSHFLRADLINIRRHFKFLFAFVIY 75
           N  TG V+HF+        ++ KF +AF +Y
Sbjct: 219 NVNTGTVTHFVALAPFKNSKNEKFSYAFTLY 249


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 299 KLVGVGVEEAGSKEFSEGKFFDG--DLYYVENISTYQQLGFKRFNILTILTSLLWKQSRD 472
           +LV +G    G KEF   ++     D  ++ENI+      F    I+   TSLL++Q + 
Sbjct: 112 RLVSIG---KGLKEFLPEEWLLSRLDCKFLENINVVPNGDFLNRKIVRTNTSLLYRQKKF 168

Query: 473 AISKGKAMGLS 505
            + + ++ G S
Sbjct: 169 NLLREESEGFS 179


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -2

Query: 372 RSPSKNFPSLNSLDPASSTPTPTSLM 295
           ++P K+  SLN + P+SSTPTP S++
Sbjct: 606 KTPEKD-RSLN-VTPSSSTPTPASVL 629


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 403 LIS*NVLDVIQISIEKLSFAELLGSGLFDANPDKFDVVLLE 281
           L+S  +  V+  +   L  +++ G  L+D   +KFD+ LLE
Sbjct: 183 LVSNFLASVLLQTEAPLDISDVCGMNLWDIQNEKFDIRLLE 223


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 483 FEIASRDCFHSSEVKIVKILNLLKPNC 403
           +EI+  D F   EVK+    N L P C
Sbjct: 124 YEISLEDMFKGKEVKLRATRNTLCPRC 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,420
Number of Sequences: 5004
Number of extensions: 57425
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)