Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30329
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   30   1.8  
SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)                 29   2.4  
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)                    29   4.1  
SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_38581| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)                     28   7.2  

>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 382 DVIQISIEKLSFAELLGSGLFDANPDKFDVVLLENRRYFAQLLAQSLQN 236
           D+++ +  K  F + L     D NP+ FD  L+E   +F   LAQ L+N
Sbjct: 351 DLLEANDTKGLFTKFLKRLETDYNPEDFDGNLIEQMSHFVYELAQFLEN 399


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 257 ELSEIAPILKQHNIKLVGVGVEEAGSKEFSEGKFFDGDLYY 379
           EL+ + P L +  + L+GV  E+ G KEF    + +G++Y+
Sbjct: 42  ELASLRPELDKLGVPLIGVVHEKKGVKEFK--PYLNGEIYF 80


>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
          Length = 963

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 273 RLFSSSTTSNLSGLASKRPDPRSSAKESFSMEIC 374
           RL+ S  TS  SG  S++ D    A E+F  EIC
Sbjct: 242 RLYRSQVTSIDSGFNSRKRDDVGEAVENFCKEIC 275


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 628 FKSPN*TDDPQVRFAQNGGASSRPFLPERRHPLEP 524
           F+SP     P  RFA  G    + FLP +   +EP
Sbjct: 329 FESPAPQQAPPSRFAGGGRPQPKSFLPNKNEEMEP 363


>SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)
          Length = 477

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 81  HKSEQKLKMSPDINQIGTQKVRNVSSGEVLELKSFWEQQN 200
           H+ + K K+ PD+        R +S  +  +L+  WEQ+N
Sbjct: 156 HRLQYKKKVQPDLVVENKPSTRRLSKSQEDKLRRQWEQEN 195


>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 81  HKSEQKLKMSPDINQIGTQKVRNVSSGEVLELKSFWEQQN 200
           H+ + K K+ PD+        R +S  +  +L+  WEQ+N
Sbjct: 156 HRLQYKKKVQPDLVVENKPSTRRLSKSQEDKLRRQWEQEN 195


>SB_38581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 44  YCRYLN*KLFDKSQKRTKT*NVSGY*SDRHAKSEKRFQWRSFR 172
           YC + N   F KS++R  T  V      RH+KS KRF W + +
Sbjct: 3   YCDFQN---FAKSRRRFPT--VKSPFGFRHSKSSKRFYWLALK 40


>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -1

Query: 361 EKLSFAELLGSGLFDAN--PDKFDVVLLENRRYFAQLLA-QSLQNMQPQRRKN 212
           +K S +EL+   L D +   +KF ++L E  RY+A   A ++   + P+ +K+
Sbjct: 258 KKNSISELISKALQDGHISDEKFRLILQEQERYYALKAAIRARHGLAPREKKS 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,991,951
Number of Sequences: 59808
Number of extensions: 398560
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)