Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30329
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              24   1.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 317 VEEAGSKEFSEGKFFDGDLYYV-ENISTYQQLGFKRFNILTILTSLLWKQSRDAI 478
           V E G+ +    + ++G++    EN+ +Y +   K+FN++    +   K +RD +
Sbjct: 34  VGETGTSQKIIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTRDIV 88


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 283 ENRRYFAQLLAQSLQNMQPQRRKNTI 206
           +NR  FA   + S++N  P RR++ +
Sbjct: 9   KNREMFAIKKSYSIENGYPARRRSLV 34


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 587 CTKWRSKFPPFSTR 546
           C  W SKFP  S R
Sbjct: 401 CRSWLSKFPTRSKR 414


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 587 CTKWRSKFPPFSTR 546
           C  W SKFP  S R
Sbjct: 401 CRSWLSKFPTRSKR 414


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 332 SKEFSEGKFFDGDLYY 379
           +K+F++GKF   D+ Y
Sbjct: 277 TKQFTQGKFQANDIQY 292


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 275  PILKQHNIKLVGVGVEEAGS 334
            PI+     K VGVGV  +GS
Sbjct: 1204 PIVLASGNKNVGVGVSNSGS 1223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,685
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)