Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30329
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37240.1 68415.m04569 expressed protein weak similarity to fm...    31   0.64 
At2g05790.1 68415.m00623 glycosyl hydrolase family 17 protein si...    30   1.1  
At1g64940.1 68414.m07361 cytochrome P450, putative similar to cy...    28   4.5  
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    28   5.9  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    28   5.9  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    28   5.9  
At5g41630.1 68418.m05058 F-box family protein contains F-box dom...    27   7.8  

>At2g37240.1 68415.m04569 expressed protein weak similarity to fmHP
           (GI:22902096) [Takifugu rubripes]
          Length = 248

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 120 NQIGTQKVRNVSSGEVLELKSFWEQQNVAIVFFRRWGCMFCR 245
           + + T KV ++   E+  +   W+ +   + F R +GC+ CR
Sbjct: 69  DSLDTVKVLDLRGNEI-PISDLWKDRKAVVAFARHFGCVLCR 109


>At2g05790.1 68415.m00623 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 472

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = +1

Query: 421 VQYFNYFN------FAAMEAIT*RDFERKSHGLKWHMKGDWVQVGG--AALVEKGGNLLR 576
           ++YFN F+      FAAM A+   D E       W  KGD  +VG   A      GNL+R
Sbjct: 232 LRYFNLFDAQIDAVFAAMSALKYDDIEIIVTETGWPSKGDENEVGATLANAASYNGNLIR 291

Query: 577 HFVQTG 594
             +  G
Sbjct: 292 RILTRG 297


>At1g64940.1 68414.m07361 cytochrome P450, putative similar to
           cytochrome p450 GI:438242 from [Solanum melongena]
          Length = 511

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 353 KFFDGDLYYVENISTYQQLGFKRFNILTI---LTSLLWKQ 463
           K  +  +  VE +   Q LGF RFNILT+    T L++++
Sbjct: 195 KLDEKQIKQVEYVQRRQLLGFSRFNILTLWPKFTKLIYRK 234


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 330 PASSTPTPTSLMLCCLRIGAISL 262
           PAS+TP   SL + C R+G + +
Sbjct: 33  PASNTPNKQSLSIRCARVGGVEI 55


>At3g47910.1 68416.m05224 expressed protein low similarity to
           nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
           GI:189036; contains Pfam profiles PF04780: Protein of
           unknown function (DUF629), PF04781: Protein of unknown
           function (DUF627)
          Length = 1290

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 90  EQKLKMSPDINQIGTQKVRNVSSGEVLELK 179
           +QK ++S ++++I  Q +RNV+  + LELK
Sbjct: 855 KQKEQLSAELSRIDAQMMRNVTGMQQLELK 884


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1568

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 90  EQKLKMSPDINQIGTQKVRNVSSGEVLELK 179
           +QK ++S ++++I  Q +RNV+  + LELK
Sbjct: 815 KQKEQLSAELSRIDAQMMRNVTGMQQLELK 844


>At5g41630.1 68418.m05058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 498 PMAFPFEIASRDCFHSSEVKIVKILN 421
           P  F   + +R C  SS VK++KILN
Sbjct: 399 PTNFVGGVVARPCLSSSPVKVLKILN 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,341,569
Number of Sequences: 28952
Number of extensions: 297240
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)