Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30328
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    42   8e-05
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    27   1.9  
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   7.6  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 4   KPIIAAVNGFALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVG 174
           KP++A +NG  +GGG  LAM      A E   F  PE  IG       +    RLP Y G
Sbjct: 153 KPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFG 212


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 498 FPLFHVFYVVENVLLFVRQ 554
           FP+F +++ +E +LLF+RQ
Sbjct: 190 FPIFLIWWKIEGILLFLRQ 208


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 627 DFARFFLSIYKSYKQYYTSHLIS 559
           D     +S+YKSYK Y T+ ++S
Sbjct: 27  DVTMINISLYKSYKSYPTNKVLS 49


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = +1

Query: 25  NGF-ALG---GGC---ELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYV 171
           NGF ALG   GG     LA  CD          G P   I TIPG   T  + + V
Sbjct: 98  NGFYALGLSQGGLFLRALAQTCDAAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,465
Number of Sequences: 5004
Number of extensions: 68890
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)