Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30327
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.37 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.6  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   6.1  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 378 CFSDMNTLFIYSRFSALQ---LNVVCCYVFDC 464
           CFS+M+ LF  S +SAL    L V+  YV +C
Sbjct: 563 CFSEMSPLFACSTYSALAFILLQVISSYVTNC 594


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 202 YCVVSASFLTFSIA*ELINFLCSWNSAPSG 291
           +C++S   L   +A EL+ FLC ++  P+G
Sbjct: 274 HCLLSTKLLVRKLAAELLTFLC-YSEKPNG 302



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 329 ANFYAIENVLKLALSTLFQ*YEYAIYLFTILCSSAKXXXXXXXXXXF*SFTQMKM 493
           +N Y I++V+   LST     + A  L T LC S K            +F  +K+
Sbjct: 264 SNKYPIDSVVHCLLSTKLLVRKLAAELLTFLCYSEKPNGINAIMKCMKNFANLKV 318


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 375 HCFSDMNTLFIYSRFSALQLN 437
           HC    N L IY+R++ALQ N
Sbjct: 795 HCKLSENQLEIYNRYAALQKN 815


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 205 CVVSASFLTFSIA*ELIN 258
           C+VS SFLTF++  +L N
Sbjct: 493 CIVSVSFLTFTVYAKLTN 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,294
Number of Sequences: 5004
Number of extensions: 39878
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)