Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30327
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42508| Best HMM Match : Peptidase_U57 (HMM E-Value=4.2)             27   8.4  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             27   8.4  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_42508| Best HMM Match : Peptidase_U57 (HMM E-Value=4.2)
          Length = 703

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 329 LIFVWNGIVCLRLPLGALFQLHKKLINSYAIENVKKLALTTQYSATAQLTK*SXSVD 159
           L+ +   +V + LP+ ++  LH  L++ Y I N    AL       A+L K S S+D
Sbjct: 543 LLMLTTKLVGMALPIDSVVDLHNDLVSDYIINNEGVTAL------HAKLPKGSASID 593


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 31   DKILSM*QESLAIYVLLNGYREIEIQVMKLVYAGRQCDM*ILSSTDXLYLV 183
            DK+  +  + +++  + NG++E+ I+V K   A   C M  L     + LV
Sbjct: 1153 DKLFGLIVDGMSLVHIFNGHKELFIEVCKFCMAVLCCRMSPLQKAQVVQLV 1203


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 308  IVCLRLPLGALFQLHKKLINSYAIEN-VKKLALTTQYSA 195
            +V + LP+ ++  LH +L++ Y I N ++ L  +  YSA
Sbjct: 1152 LVGITLPIDSVVDLHNELVSDYIINNELRTLCGSRLYSA 1190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,372
Number of Sequences: 59808
Number of extensions: 272730
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)