Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30327
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 478 YANENVFNFIAPPLYCFLFSVHN 546
           Y  E+   F+   +Y F  ++HN
Sbjct: 324 YEQESKVQFVVDAVYAFALALHN 346


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 478 YANENVFNFIAPPLYCFLFSVHN 546
           Y  E+   F+   +Y F  ++HN
Sbjct: 414 YEQESKVQFVVDAVYAFALALHN 436


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 536 ENKKQYNGGAIKLNTFSF 483
           EN  QY G    LNT SF
Sbjct: 293 ENNVQYEGSQDILNTQSF 310


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 275 FQLHKKLINSYAIENV 228
           F LHK+++N Y +E +
Sbjct: 259 FFLHKQVLNRYYLERL 274


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 275 FQLHKKLINSYAIENV 228
           F LHK+++N Y +E +
Sbjct: 259 FFLHKQVLNRYYLERL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,699
Number of Sequences: 438
Number of extensions: 2620
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)