Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30326
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    91   1e-19
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   7.9  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 38/72 (52%), Positives = 53/72 (73%)
 Frame = +2

Query: 50  CRESAEVXLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMG 229
           C +  +  +  +DKKKYLVPSDLTVGQF ++IRKRI L PE A+F F++ ++PPT+A M 
Sbjct: 33  CEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMS 92

Query: 230 SLYQEHHDEISF 265
           ++Y+EH  E  F
Sbjct: 93  TIYEEHKSEDGF 104



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   EGEKIRRKYPDRVPVIVEKAPKXRLETSTKR 95
           E ++IR KYPDR+PVI EK  K  +    K+
Sbjct: 17  ESQRIREKYPDRIPVICEKVDKSDIAAIDKK 47


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 367  KLNFTIWSDSVKLFESE*FGINFHRHFRRKMLCIKRNLIMVFLIERPHCCRCGWN 203
            K +    +DS  L E+   G+    +F   + C++  L+ ++L     CC+C W+
Sbjct: 1088 KTSKVFMNDSSVLKEASLSGLK-EFYFCEPLECVE-TLVQIYLENNVECCQCIWD 1140


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 297 WKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFYY 416
           WK++ + S + S    D  +   LS+ L  CI++  F ++
Sbjct: 124 WKMVVDVSPAFSVNPIDKKLAIGLSVGLSCCILIVLFLHF 163


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 333 NYLKVNNLELISIDIF-VGKC 274
           N  KVN ++LISI++F +G C
Sbjct: 71  NKSKVNEIQLISIEVFIIGIC 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,294
Number of Sequences: 5004
Number of extensions: 48150
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)