Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30326
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 91 8e-19
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 87 7e-18
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 77 1e-14
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 47 9e-06
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 47 1e-05
05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866 33 0.22
07_03_0039 - 12718972-12720699 29 2.0
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 28 4.6
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 6.1
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 28 6.1
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753... 28 6.1
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 27 8.1
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 90.6 bits (215), Expect = 8e-19
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 80 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEI 259
D+DKKKYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT+A M ++Y+E+ DE
Sbjct: 44 DIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDED 103
Query: 260 SF 265
F
Sbjct: 104 GF 105
Score = 34.7 bits (76), Expect = 0.053
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 3 EGEKIRRKYPDRVPVIVEKAPKXRLETSTKR 95
E +IR KY DR+PVIVEKA + + K+
Sbjct: 18 EANRIREKYSDRIPVIVEKAERSDIPDIDKK 48
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 87.4 bits (207), Expect = 7e-18
Identities = 36/62 (58%), Positives = 50/62 (80%)
Frame = +2
Query: 80 DLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEI 259
++DKKKYLVP+DLTVGQF +++RKRI L PE A+F FV N +PPT++ M ++Y+E+ DE
Sbjct: 208 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDED 267
Query: 260 SF 265
F
Sbjct: 268 GF 269
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 3 EGEKIRRKYPDRVPVIVEKAPK 68
E +IR KY DR+PVIVEKA K
Sbjct: 182 ESARIREKYSDRIPVIVEKADK 203
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/57 (56%), Positives = 44/57 (77%)
Frame = +2
Query: 95 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEISF 265
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+ DE F
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGF 1940
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 EGEKIRRKYPDRVPVIVEKAPKXRL-ETSTKRSI 101
E +IR KYPDR+PVIVEKA + + + K+S+
Sbjct: 1811 EANRIREKYPDRIPVIVEKAERSDIPDIDKKKSV 1844
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 146 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE 256
++++HL P ALF FVNN +P T+ MGS+Y+ + DE
Sbjct: 221 KRKLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDE 257
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 146 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE 256
++++HL P ALF FVNN +P T+ MGS+Y+ + DE
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDE 71
>05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866
Length = 640
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 389 YYFMVFFLLLIGI*YYF-CLHMNSIKLFK 472
YY++V FLL++ + YYF C H ++K F+
Sbjct: 576 YYWLVTFLLVLNLAYYFVCFHFYTLKSFE 604
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 104 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 217
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +3
Query: 255 RFLFIHSIFRRKCLW------KLIPNYSLSNSFTLSDHMVKFN 365
RF+F+ S++ + + KLI N+SL+ + + DH + FN
Sbjct: 1350 RFVFLDSLYDEESFYHAELRPKLISNFSLAWNLYVQDHSIDFN 1392
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 294 LWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCII 395
LW+L+ +SL S + +++SL LK C +
Sbjct: 335 LWELVERHSLEREVFSSFKQIYYDMSLMLKSCFL 368
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 268 IKRNLIMVFLIERP-HCCRCGWNDIVHEEEKCV 173
++R+ + V L + P CCRC +++ +++C+
Sbjct: 473 LQRDTLTVLLDDHPLRCCRCSARAVLYSKKRCM 505
>04_03_0282 -
13874547-13874738,13875047-13875134,13875222-13875328,
13875487-13875542,13875853-13875882,13877397-13877505,
13877774-13878318,13879584-13879668,13879753-13879914,
13880293-13880434,13880524-13880624,13882307-13882489
Length = 599
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRGLQAXLRRF 57
SG RT Q L Q EL C G A RRF
Sbjct: 212 SGVAVRTAQALPQDELRHEVCIGRNASARRF 242
>05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 273 SIFRRKCLWKLIPNYSLSNSFTLSDHMVKFN 365
SI+ ++ KLI N+SL+ + + DH + FN
Sbjct: 933 SIYHQQIRPKLISNFSLAWNLYVKDHPIDFN 963
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,336
Number of Sequences: 37544
Number of extensions: 257305
Number of successful extensions: 653
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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