Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30326
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 130 6e-31
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 55 4e-08
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 30 1.2
SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 28 6.3
SB_49072| Best HMM Match : rve (HMM E-Value=2.7e-29) 28 6.3
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 28 6.3
SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_37298| Best HMM Match : rve (HMM E-Value=2.7e-29) 28 6.3
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 28 6.3
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 28 6.3
SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31) 28 6.3
SB_50431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_49679| Best HMM Match : rve (HMM E-Value=8.4e-27) 28 6.3
SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29) 28 6.3
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.3
SB_3471| Best HMM Match : rve (HMM E-Value=2.7e-29) 28 6.3
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 119
Score = 130 bits (315), Expect = 6e-31
Identities = 59/70 (84%), Positives = 64/70 (91%)
Frame = +2
Query: 56 ESAEVXLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 235
++ + +GDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMG L
Sbjct: 35 KAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGQL 94
Query: 236 YQEHHDEISF 265
YQEHH+E F
Sbjct: 95 YQEHHEEDFF 104
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 3 EGEKIRRKYPDRVPVIVEKAPKXRLETSTKR 95
EGEKIR+KYPDRVPVIVEKAPK R+ K+
Sbjct: 17 EGEKIRKKYPDRVPVIVEKAPKARIGDLDKK 47
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 256 DFFLYIAFSDENVYG 300
DFFLYIA+SDE+VYG
Sbjct: 102 DFFLYIAYSDESVYG 116
>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 140
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 53 RESAEVXLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMG 229
R E L LDK K+LVP +LT+ QF +IR R+ L A + VNN + S TM
Sbjct: 44 RYHKEKDLPLLDKTKFLVPQELTMSQFVTIIRNRMSLSSTQAFYLIVNNKSLASMSMTMA 103
Query: 230 SLYQEHHDEISF 265
LY+E DE F
Sbjct: 104 ELYREEKDEDGF 115
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 122 LLNQTELNTSFCRGLQAXLRRFLYNYRNAIW 30
L + E+N FC Q L+R L N++ ++W
Sbjct: 202 LAYEVEMNPGFCNEKQIQLKRSLRNFQESVW 232
>SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1284
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F RG LQ L FL++YRN
Sbjct: 1055 NGEAERYVQTLKQALLTSKFDRGKSLQQRLSSFLFSYRN 1093
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 86 DKKKYLVPSDLTVGQFYFLIRKRIHLR 166
D K YL P D G+FY L +IH+R
Sbjct: 231 DTKSYLTPKDSKPGRFYIL--PKIHIR 255
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 946 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 984
>SB_49072| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 307
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 216 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 254
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 1030 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 1068
>SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 1052 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 1090
>SB_37298| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 350
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 121 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 159
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 429 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 467
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 324 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 362
>SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31)
Length = 488
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 259 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 297
>SB_50431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 194 NNVIPPTSATMGSLYQEHHDEISFY 268
N VIPP S + S ++HH ++S++
Sbjct: 252 NQVIPPYSQSPASASKDHHGDVSWW 276
>SB_49679| Best HMM Match : rve (HMM E-Value=8.4e-27)
Length = 212
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 121 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 159
>SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)
Length = 361
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 270 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 308
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 1069 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 1107
>SB_3471| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 212
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 149 SGSRSRTGQLLNQTELNTSFCRG--LQAXLRRFLYNYRN 39
+G R Q L Q L + F +G LQ L FL++YRN
Sbjct: 121 NGEAERYVQTLKQALLTSKFDQGKSLQQRLSSFLFSYRN 159
>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = -2
Query: 259 NLIMVFLIERPHCCRCGWNDIVHEEEKCVFRPQVNTFPDQEVELANC*IRRN*ILLFVEV 80
+++ L +RP +++V ++++ VF+P +T DQ+ + + R LF
Sbjct: 145 SVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQDDSTEVLLARTQQTLFERR 204
Query: 79 SKRYF 65
++ F
Sbjct: 205 PEKSF 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,486
Number of Sequences: 59808
Number of extensions: 314535
Number of successful extensions: 662
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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