Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30326
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   116   9e-27
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   116   9e-27
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    48   6e-06
AF125451-6|AAD12825.1|  554|Caenorhabditis elegans Hypothetical ...    30   1.0  
AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z29443-6|CAA82573.2|  280|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L26545-2|AAA20080.1|  280|Caenorhabditis elegans CED-9 protein.        27   7.2  
U70857-9|AAB09174.1|  261|Caenorhabditis elegans C.elegans homeo...    27   9.5  
AF003389-10|AAC71135.2|  289|Caenorhabditis elegans Hypothetical...    27   9.5  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  116 bits (280), Expect = 9e-27
 Identities = 54/64 (84%), Positives = 56/64 (87%)
 Frame = +2

Query: 74  LGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHD 253
           L DLDKKKYLVPSDLTVGQFYFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+
Sbjct: 41  LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHE 100

Query: 254 EISF 265
           E  F
Sbjct: 101 EDLF 104



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +3

Query: 3   EGEKIRRKYPDRVPVIVEKAPKXRLETSTKR 95
           EG+KIRRKYPDR+PVIVEKAPK +L    K+
Sbjct: 17  EGDKIRRKYPDRIPVIVEKAPKSKLHDLDKK 47



 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 256 DFFLYIAFSDENVYG 300
           D FLYIA+SDE+VYG
Sbjct: 102 DLFLYIAYSDESVYG 116


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  116 bits (280), Expect = 9e-27
 Identities = 54/64 (84%), Positives = 56/64 (87%)
 Frame = +2

Query: 74  LGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHD 253
           L DLDKKKYLVPSDLTVGQFYFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+
Sbjct: 41  LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHE 100

Query: 254 EISF 265
           E  F
Sbjct: 101 EDLF 104



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +3

Query: 3   EGEKIRRKYPDRVPVIVEKAPKXRLETSTKR 95
           EG+KIRRKYPDR+PVIVEKAPK +L    K+
Sbjct: 17  EGDKIRRKYPDRIPVIVEKAPKSKLHDLDKK 47



 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 256 DFFLYIAFSDENVYG 300
           D FLYIA+SDE+VYG
Sbjct: 102 DLFLYIAYSDESVYG 116


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 53  RESAEVXLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN-NVIPPTSATMG 229
           R   E  L  +D+ K+LVP  +TV +   ++R+R+ L P+ A F  VN   +   S +M 
Sbjct: 47  RFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMS 106

Query: 230 SLYQEHHDEISF 265
           +LY +  D   F
Sbjct: 107 NLYSQERDPDGF 118


>AF125451-6|AAD12825.1|  554|Caenorhabditis elegans Hypothetical
           protein Y37E11B.5 protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 50  CRESAEVXLGDLDKKKYLVPSDLTVGQFYF 139
           CRE   + +G LD KKYL P   TVG   F
Sbjct: 191 CREKKPLNMGSLDGKKYLAPL-TTVGNLPF 219


>AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical
           protein C30E1.6 protein.
          Length = 247

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 330 SFTLSDHMVKFNLSLRLKLCIILWYFFY 413
           SFT+ +  + F++ L  KL +++++FFY
Sbjct: 116 SFTIPNFSISFSIFLWAKLQVLIYFFFY 143


>Z29443-6|CAA82573.2|  280|Caenorhabditis elegans Hypothetical
           protein T07C4.8 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 449 MNSIKLFKQVRDCFVFTSLF 508
           M S++L  QVR+ FV+TSLF
Sbjct: 186 MESVELQGQVRNLFVYTSLF 205


>L26545-2|AAA20080.1|  280|Caenorhabditis elegans CED-9 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 449 MNSIKLFKQVRDCFVFTSLF 508
           M S++L  QVR+ FV+TSLF
Sbjct: 186 MESVELQGQVRNLFVYTSLF 205


>U70857-9|AAB09174.1|  261|Caenorhabditis elegans C.elegans homeobox
           protein 33 protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 260 KSHHGVLDRETPLLQMWVE*HCSRRRKVR---LQAAGEY 153
           +SHH   +   PL + W+  H     K+R   L A G+Y
Sbjct: 80  ESHHFASEHHLPLQEWWLNAHYHEAEKIRGRQLGAVGKY 118


>AF003389-10|AAC71135.2|  289|Caenorhabditis elegans Hypothetical
           protein F23H11.7 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 50  CRESAEVXLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF 190
           C ES ++ +GD   +K  VPS L+  Q  + + + ++L P  +L  F
Sbjct: 62  CCESGQMTVGDWFSEKSFVPSILS--QAPYTLLRTVNLTPASSLLNF 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,735
Number of Sequences: 27780
Number of extensions: 261766
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)