Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30326
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 307 INFHRHFRRKMLCIKRNLIMVFLIER 230
           I   RH RR++L   +N++ V  +ER
Sbjct: 10  IQERRHIRRELLRWTKNMVFVVGLER 35


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 179 LFFFVNNVIPPTSATMGSLYQEHHDEIS 262
           LFF +      + A  G+ YQ +H +IS
Sbjct: 13  LFFIIGFFNAISGAIKGNDYQRYHQQIS 40


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 300 SIDIFVGKCYV 268
           SID+++G C+V
Sbjct: 282 SIDVYLGTCFV 292


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 300 SIDIFVGKCYV 268
           SID+++G C+V
Sbjct: 282 SIDVYLGTCFV 292


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 300 SIDIFVGKCYV 268
           SID+++G C+V
Sbjct: 221 SIDVYLGTCFV 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,285
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)