Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30325
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   0.98 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   0.98 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   0.98 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   9.1  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  VCLVALALFGSVAAQPAK 112
           VC++ LA FG V AQ  K
Sbjct: 5   VCVLVLAFFGCVRAQQLK 22


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 241 KGHFPISDVVEVTKNGAGNDVTGRSTGD 324
           KG  PI  V++    G   ++TG + GD
Sbjct: 24  KGKMPIDLVIDERDGGKPPELTGSTNGD 51


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 241 KGHFPISDVVEVTKNGAGNDVTGRSTGD 324
           KG  PI  V++    G   ++TG + GD
Sbjct: 180 KGKMPIDLVIDERDGGKPPELTGSTNGD 207


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -1

Query: 97   CHAPEEGEGDQTHHFTGHHFFSD 29
            C  P   +G   HH +  HF  D
Sbjct: 1059 CDTPFISKGAYRHHLSKMHFVKD 1081


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 150 SRR*GPAAPKDPTR 191
           SRR GPA   DPT+
Sbjct: 416 SRRKGPAFKVDPTQ 429


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 220 ATGLHFQKGHFPISDVVEVTKNGAGNDVTGR 312
           + GL    G++P    +     GAG D+  R
Sbjct: 57  SAGLQPTTGYYPYDPALAAYGYGAGYDLAAR 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,387
Number of Sequences: 336
Number of extensions: 2387
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)