Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30325
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.44 
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   2.3  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   3.1  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   7.2  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   7.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   7.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 88  PEEGEGDQTHHFTGHHFFSDSY 23
           PE  E +  HH  GHH F+D +
Sbjct: 63  PERDEAEAPHHPKGHHEFNDDF 84


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +3

Query: 105 QPRMPSGREPLWTA-WSRR*GPAAPKDPTRPPASS--TRSCRYWTPFSKRTLSDL*CCRS 275
           +PR    RE   T  W RR GP  P +P   P     T S R+  P   R  SD      
Sbjct: 168 EPRRSFAREERSTGDWVRR-GPLPPAEPAESPFGKRRTNSGRFRDP--ARDPSDR---VR 221

Query: 276 DEERRWQRR 302
           +E R W RR
Sbjct: 222 EEPREWVRR 230


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 295 NDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDE 432
           N +  R +GDF +         D+   LP+ D  + V P++ D+ E
Sbjct: 218 NSLGTRVSGDFDEDFPTGTVFFDLESHLPLLDVALPVLPKSSDSSE 263


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 313 STGDFFDGVENYI---QSHDVXFKLPIADTQITVSPRN-LDNDELTLNVKFNKEGARSVG 480
           S GDF+D +   +   Q++++   L    + +  +  N L++ + TLN + N+E   S+ 
Sbjct: 73  SMGDFYDDIRLMVSNAQTYNMPGSLVYECSVLIANTANSLESKDGTLNEEENEEMESSIN 132

Query: 481 EARKAKLKKTSSP 519
           E  K    +   P
Sbjct: 133 EEHKPGTNEIDVP 145


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 367 SRRGTECSSRPRRRSRQWIG 308
           S +  +C  RPR+R  +W G
Sbjct: 120 SHKVKDCMERPRKRGARWTG 139


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 243 FLKMESSSDMTLYLMQAVGSDPSAQPDLISSTM 145
           F K  + S + L+ + ++ SDP + P + SST+
Sbjct: 106 FAKSRNESSLKLWDLNSLLSDPKSSPLMQSSTL 138


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 183  DPSAQPDLISSTMLSIGVPFQKASLAGCAATLPKRARATKHTTLL 49
            DP  +  L +  MLS G    +    GC A L       KH  LL
Sbjct: 980  DPFEEKVLKAFNMLSKGYAEYRCQWEGCLANLHSLENFIKHVLLL 1024


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 162 GPAAPKDPTRPPASSTRSCRYWTP 233
           G   P  P  PPA S    RY+ P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,042
Number of Sequences: 5004
Number of extensions: 43528
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)