Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30325
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    34   0.085
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                32   0.26 
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.79 
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)             31   0.79 
SB_46449| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)         28   4.2  
SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_48352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         28   5.6  
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_41620| Best HMM Match : G_glu_transpept (HMM E-Value=0.092)         28   5.6  
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)                  27   7.3  
SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_26373| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 26/92 (28%), Positives = 43/92 (46%)
 Frame = -3

Query: 536  QNEHQDGDDVFLSLALRASPTERAPSLLNLTLRVNSSLSRFLGLTVI*VSAIGSLKXTSW 357
            QN+  D D    +++  + P+  + S L+   +V SSLS  +G T+   S   +    SW
Sbjct: 807  QNDEPDNDSALQAMSSPSPPSSISLSSLHPIQKV-SSLSSSIGSTLASQSTASASHIPSW 865

Query: 356  D*M*FSTPSKKSPVDRPVTSLPAPFFVTSTTS 261
              +  S PS  S +    +S   P   TS++S
Sbjct: 866  SSLSSSFPSLSSRLSSASSSASPPGTTTSSSS 897


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +3

Query: 72  PSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPPASSTRSCRYWTPFSKR 245
           P  S    Q  QPR P+G       +SR   P  P++PT P     RS R   P   R
Sbjct: 199 PHRSRRETQLAQPRNPTGPAEKPHQYSRETPPVQPRNPTGPAEKPHRSSRETPPVQPR 256


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 252  KVSFLKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGCAATLPKRAR 73
            K+    M+  + +  Y  +   S P+A P  I+S  L+     QK +  G  +T P    
Sbjct: 820  KIEISSMDIKTKLVEYAKEVTNSHPTATPKEITSLHLTTLAVTQKPTNEGATSTTPSYIA 879

Query: 72   ATKH 61
             TK+
Sbjct: 880  PTKY 883


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 132 PLWTAWSRR*GPAAP-KDPTRPPASSTR 212
           P W++W+    P +P   PTRPP  S+R
Sbjct: 382 PTWSSWTNTRAPWSPWSAPTRPPGGSSR 409


>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
          Length = 1851

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 376  LPIADTQITVSPRNLDNDELTLNVKFN 456
            LP A  Q T SPRNL+N    L + FN
Sbjct: 1615 LPDASNQTTKSPRNLENPWFVLEIVFN 1641


>SB_46449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 226 GLHFQK-GHFPISD--VVEVTKNGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQ 396
           G  F+K G +P S   V  +T++   +++    T DF      YI SHD    LPI    
Sbjct: 483 GQGFEKLGTWPRSQRIVYALTRHETADNIRACKTKDFCGANSTYIGSHDAFVLLPIRPLS 542

Query: 397 IT 402
            T
Sbjct: 543 AT 544


>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
          Length = 512

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/23 (60%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = +2

Query: 44  VSSKVVCLVALALFG-SVAAQPA 109
           ++++ VCLV LALFG S+AA+PA
Sbjct: 1   MAARGVCLVLLALFGCSLAAKPA 23


>SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 93  WQRNQPRMPSGREPLWTAWSRR*GPAAPKDPT 188
           W+ N   +      +W  + RR GP   KDPT
Sbjct: 249 WKENAEALTPIVSAIWNLYGRRHGPGNEKDPT 280


>SB_48352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +3

Query: 60  CVWSPSPSSGA--WQRNQPRMPSG 125
           C W P PSS A  W R+    PSG
Sbjct: 12  CFWVPDPSSSASYWSRSPAGTPSG 35


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 403  VSPRNLDNDELTLNVKFNKEGARSVGEARKAKLKKTSSPSWCSFC 537
            V+P++   DE+T +V   + G      A KA   K  +P W S C
Sbjct: 1520 VTPKDGRKDEVTTHVVAARLGTEKAYRALKAPGIKLVNPMWLSCC 1564


>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +3

Query: 27  ESEKKWCPVKWCVWSPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPPASS 206
           E EKK    K      S +S A+Q+N P       P   +WSR   PAA    T P  + 
Sbjct: 431 EEEKKPLEAKTTPNVGSGASSAFQKNTPSPSPKTTPSKPSWSRP-TPAASAS-TSPSGTK 488

Query: 207 TRS 215
           T+S
Sbjct: 489 TKS 491


>SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 33  EKKWCPVKWCVWSPSPSSGAWQRNQ 107
           E+ W    W +W P  S+G++  NQ
Sbjct: 177 ERHWAREVWRLWYPGESTGSYAENQ 201


>SB_41620| Best HMM Match : G_glu_transpept (HMM E-Value=0.092)
          Length = 227

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 473 ERAPSLLNLTLRVNSSLSRFLGLTVI 396
           E AP   N T+ +NSSLS  +G +V+
Sbjct: 139 EEAPGASNTTMYINSSLSSTVGASVV 164


>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
          Length = 651

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 170 CAEGSDPTACI---KYKVMSLLDSIFKKDTFRSLML 268
           CA+GSD ++       +V + L ++FK DTFR L L
Sbjct: 60  CAQGSDWSSTAFSWSQEVEAALKNVFKIDTFRHLQL 95


>SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 GPAAPKDPTRPPA-SSTRSCRYWTPFSKRTLSDL 260
           GP  P  PTR P+ S +++   ++P S   L+DL
Sbjct: 228 GPTPPPSPTRSPSRSPSQATSVFSPESSEPLNDL 261


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 5    IVQSTPVGIRKKMVSSKVVCLVALALFGSVAAQPAKDAFWKGTPMDSMVEEMRSGCAE 178
            + Q+  V  R+    S+ + L  + ++GS    P  D    G P++ M  ++ +GC E
Sbjct: 3076 VAQNVCVRCRRPR-DSETLGLSQIKVWGSTLYGPPDDGSLTGDPLEQMTCDLFTGCQE 3132


>SB_26373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +1

Query: 256 ISDVVEVTKNGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDEL 435
           I D    T    G D +    G    G+ +YI++ DV  K+ + DT++ +     D   L
Sbjct: 22  IQDGGHDTAYAEGIDYSANILGMGIRGLSSYIETLDVWEKIELKDTKVVI-----DGSCL 76

Query: 436 TLNVKFN 456
             N+ +N
Sbjct: 77  VFNLYYN 83


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +3

Query: 69   SPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPP 197
            SP PS  A    QP  PS  +P+         P  P  PT PP
Sbjct: 1063 SPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTEPP 1105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,142
Number of Sequences: 59808
Number of extensions: 339181
Number of successful extensions: 1021
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)