Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30325
         (538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031896-1|AAH31896.1|  253|Homo sapiens cell death-inducing DFF...    36   0.12 
Z47748-1|CAB94757.1|  969|Homo sapiens NFKB1 protein.                  33   0.85 
M58603-1|AAA36360.1|  968|Homo sapiens nuclear factor kappa-B DN...    33   0.85 
M55643-1|AAA36361.1|  969|Homo sapiens factor KBF1 protein.            33   0.85 
BC051765-1|AAH51765.1|  969|Homo sapiens nuclear factor of kappa...    33   0.85 
BC033210-1|AAH33210.1|  550|Homo sapiens NFKB1 protein protein.        33   0.85 
AY223820-1|AAO30127.1|  968|Homo sapiens nuclear factor of kappa...    33   0.85 
AF213884-1|AAF35232.1|  968|Homo sapiens nuclear factor of kappa...    33   0.85 
AK125756-1|BAC86276.1|  290|Homo sapiens protein ( Homo sapiens ...    32   1.1  
AL929472-9|CAH70084.1|  159|Homo sapiens chromosome 1 open readi...    32   1.5  
AK126312-1|BAC86522.1|  466|Homo sapiens protein ( Homo sapiens ...    32   1.5  
Z93783-1|CAI20354.1| 1759|Homo sapiens protein ( Human DNA seque...    30   6.0  
AL031589-2|CAI18813.1| 1759|Homo sapiens protein ( Human DNA seq...    30   6.0  
AL022238-1|CAI18982.1| 1759|Homo sapiens protein ( Human DNA seq...    30   6.0  
AB029016-1|BAA83045.2| 1727|Homo sapiens KIAA1093 protein protein.     30   6.0  
AK090397-1|BAC03378.1|  165|Homo sapiens FLJ00272 protein protein.     29   7.9  

>BC031896-1|AAH31896.1|  253|Homo sapiens cell death-inducing
           DFFA-like effector a protein.
          Length = 253

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 72  PSPSSGAWQRNQPRM-PSGREPLWTAWSRR*GPAAPKDPTRP 194
           P   +G+W R  PR+ PS +  LW   S R GP  P +P+RP
Sbjct: 10  PGNHNGSWAREGPRLGPSWKRGLW---SPRGGPNRPAEPSRP 48


>Z47748-1|CAB94757.1|  969|Homo sapiens NFKB1 protein.
          Length = 969

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 240 LKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGC 100
           L M S+S   L L+ A G+D +AQ      T L + V     SLAGC
Sbjct: 658 LAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGC 704


>M58603-1|AAA36360.1|  968|Homo sapiens nuclear factor kappa-B DNA
           binding subunit protein.
          Length = 968

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 240 LKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGC 100
           L M S+S   L L+ A G+D +AQ      T L + V     SLAGC
Sbjct: 657 LAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGC 703


>M55643-1|AAA36361.1|  969|Homo sapiens factor KBF1 protein.
          Length = 969

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 240 LKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGC 100
           L M S+S   L L+ A G+D +AQ      T L + V     SLAGC
Sbjct: 658 LAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGC 704


>BC051765-1|AAH51765.1|  969|Homo sapiens nuclear factor of kappa
           light polypeptide gene enhancer in B-cells 1 (p105)
           protein.
          Length = 969

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 240 LKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGC 100
           L M S+S   L L+ A G+D +AQ      T L + V     SLAGC
Sbjct: 658 LAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGC 704


>BC033210-1|AAH33210.1|  550|Homo sapiens NFKB1 protein protein.
          Length = 550

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 240 LKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGC 100
           L M S+S   L L+ A G+D +AQ      T L + V     SLAGC
Sbjct: 239 LAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGC 285


>AY223820-1|AAO30127.1|  968|Homo sapiens nuclear factor of kappa
           light polypeptide gene enhancer in B-cells 1 (p105)
           protein.
          Length = 968

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 240 LKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGC 100
           L M S+S   L L+ A G+D +AQ      T L + V     SLAGC
Sbjct: 657 LAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGC 703


>AF213884-1|AAF35232.1|  968|Homo sapiens nuclear factor of kappa
           light polypeptide gene enhancer in B-cells 1 protein.
          Length = 968

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 240 LKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGC 100
           L M S+S   L L+ A G+D +AQ      T L + V     SLAGC
Sbjct: 657 LAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGC 703


>AK125756-1|BAC86276.1|  290|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43768 fis, clone TESTI2049422. ).
          Length = 290

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +3

Query: 51  VKWCVWSPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDP-------TRPPASST 209
           V+WC  S +  S +W+R+  R P+G      AW RR G      P          P  S 
Sbjct: 143 VEWC--SKNLYSASWKRSHSRRPAGAA---RAWERRPGRGCTPGPGGGRGRAGAEPGGSR 197

Query: 210 RSCRYWTP 233
           R+CR+  P
Sbjct: 198 RACRHTGP 205


>AL929472-9|CAH70084.1|  159|Homo sapiens chromosome 1 open reading
           frame 122 protein.
          Length = 159

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +3

Query: 72  PSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPPASSTRSCRYWTPFS 239
           P  S+G  + +     +GR P WTA  R  G A     +RP  S+  SC  WT +S
Sbjct: 24  PRASAGPDRLSLALSRAGRLPAWTAGRRGWGSAGGHPHSRPGRSAPSSC--WTRWS 77


>AK126312-1|BAC86522.1|  466|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44335 fis, clone TRACH3004537. ).
          Length = 466

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = +3

Query: 60  CVWSPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPPASSTRSCRYWTPFS 239
           C W   P SG  QR  PR+ S RE    A  +           R PA ST++ R W    
Sbjct: 58  CEWVRLPGSGDRQRTDPRLGSWREGRRGA-GQPGSDTVSSSGRRRPAGSTQAGRGWASLE 116

Query: 240 KRT 248
             T
Sbjct: 117 PAT 119


>Z93783-1|CAI20354.1| 1759|Homo sapiens protein ( Human DNA sequence
           from clone RP3-377F16 on chromosome 22. ).
          Length = 1759

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  PSP-SSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKD 182
           P P +SG+W    P  P    P  ++WS    PA PKD
Sbjct: 868 PQPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPATPKD 905


>AL031589-2|CAI18813.1| 1759|Homo sapiens protein ( Human DNA
           sequence from clone RP6-11O7 on chromosome 22q13.1-13.2.
           ).
          Length = 1759

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  PSP-SSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKD 182
           P P +SG+W    P  P    P  ++WS    PA PKD
Sbjct: 868 PQPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPATPKD 905


>AL022238-1|CAI18982.1| 1759|Homo sapiens protein ( Human DNA
           sequence from clone RP5-1042K10 on chromosome
           22q13.1-13.2.  ).
          Length = 1759

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  PSP-SSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKD 182
           P P +SG+W    P  P    P  ++WS    PA PKD
Sbjct: 868 PQPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPATPKD 905


>AB029016-1|BAA83045.2| 1727|Homo sapiens KIAA1093 protein protein.
          Length = 1727

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  PSP-SSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKD 182
           P P +SG+W    P  P    P  ++WS    PA PKD
Sbjct: 837 PQPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPATPKD 874


>AK090397-1|BAC03378.1|  165|Homo sapiens FLJ00272 protein protein.
          Length = 165

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -1

Query: 193 GRVGSFGAAGPHLLDHAVHRGSLPEGILGWLRCHAPEEGEGDQTHHFTGHHFF 35
           GRVG  G+   HL       G++ E    W    AP EG+ D   H  G   F
Sbjct: 5   GRVGGVGSQAAHLTCEGALGGTVGEVASHWSLGLAPSEGQQD---HVAGKELF 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,367,663
Number of Sequences: 237096
Number of extensions: 1723502
Number of successful extensions: 6116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6116
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)