Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30325
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical ...    30   1.2  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   6.5  
Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    27   8.6  

>AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7a protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 283 NGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDELTLNVKFNKE 462
           +G  + V G S    F+G E YI   +   +  +   ++T  P +  N E + +VK+N+ 
Sbjct: 523 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 581

Query: 463 GARS 474
           GA++
Sbjct: 582 GAQA 585


>AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7b protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 283 NGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDELTLNVKFNKE 462
           +G  + V G S    F+G E YI   +   +  +   ++T  P +  N E + +VK+N+ 
Sbjct: 521 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 579

Query: 463 GARS 474
           GA++
Sbjct: 580 GAQA 583


>AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7c protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 283 NGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDELTLNVKFNKE 462
           +G  + V G S    F+G E YI   +   +  +   ++T  P +  N E + +VK+N+ 
Sbjct: 495 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 553

Query: 463 GARS 474
           GA++
Sbjct: 554 GAQA 557


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 165 PAAPKDPTRPPASSTRSCRYWTPFSKRTLSD 257
           PAAP  P   P+ +  S R+ +P   RTL D
Sbjct: 236 PAAPPPPVPTPSIAQMSSRFQSPAISRTLDD 266


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 165 PAAPKDPTRPPASSTRSCRYWTPFSKRTLSD 257
           PAAP  P   P+ +  S R+ +P   RTL D
Sbjct: 238 PAAPPPPVPTPSIAQMSSRFQSPAISRTLDD 268


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = +3

Query: 72  PSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPPASSTRSCRY 224
           PS   G      P  P+GR+P     S   G   P  P  PP SS R  RY
Sbjct: 371 PSIGGGVGGGGAPLAPTGRDPYSVGESWANGAGGPGGP--PPVSSDRD-RY 418


>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 247 HFPISDVVEVTKNGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADT 393
           H  ++    +     G+DV+  S G  FD       S  V F +PI+ T
Sbjct: 750 HLAVTQTTSLNSTPRGSDVSRASDGMLFDYDRRASASPRVSFDIPISPT 798


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 247 HFPISDVVEVTKNGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADT 393
           H  ++    +     G+DV+  S G  FD       S  V F +PI+ T
Sbjct: 750 HLAVTQTTSLNSTPRGSDVSRASDGMLFDYDRRASASPRVSFDIPISPT 798


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,008
Number of Sequences: 27780
Number of extensions: 252560
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)