Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30325
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19900.1 68418.m02368 PRLI-interacting factor, putative stron...    31   0.64 
At5g45430.1 68418.m05582 protein kinase, putative contains simil...    29   2.6  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   2.6  
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati...    28   3.4  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    28   4.5  
At4g38060.2 68417.m05375 expressed protein                             27   6.0  
At4g38060.1 68417.m05376 expressed protein                             27   6.0  
At3g47620.1 68416.m05184 TCP family transcription factor, putati...    27   6.0  
At3g19780.1 68416.m02504 expressed protein                             27   6.0  
At2g40070.1 68415.m04923 expressed protein                             27   7.9  
At1g32160.1 68414.m03956 expressed protein                             27   7.9  
At1g31120.1 68414.m03808 potassium transporter family protein si...    27   7.9  
At1g10550.1 68414.m01188 xyloglucan:xyloglucosyl transferase, pu...    27   7.9  

>At5g19900.1 68418.m02368 PRLI-interacting factor, putative strong
           similarity to PRLI-interacting factor A [Arabidopsis
           thaliana] GI:11139262
          Length = 494

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 262 DVVEVTKNGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDELTL 441
           +VVE      G+D  G       +  EN++ + DV  +   A     V   N +N +   
Sbjct: 363 EVVENESESDGDDTGGSDARTSGETKENHVAAEDVCMQDVAARDNEAVVKENNNNSKSVD 422

Query: 442 NVKFNKE--GARSVGEARKAKLKKTSS 516
            VK NK+  G  S GE++    +K  +
Sbjct: 423 EVKANKQSVGVGSSGESKPEGKEKAET 449


>At5g45430.1 68418.m05582 protein kinase, putative contains
           similarity to male germ cell-associated kinase [Homo
           sapiens] gi|23268497|gb|AAN16405
          Length = 499

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = +1

Query: 283 NGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDELTLNVK---- 450
           NG  + VT ++   F +GV NY+ +  +        TQ  V   N +N     N K    
Sbjct: 355 NGVNSYVTAKTNAPFSNGVNNYV-APKMNAPFDNGATQQKVDTTNNNNQNTAWNNKPVRS 413

Query: 451 FNKEGARSVGEARKAKLKKTSSPSW 525
           +N + ++     RK+ L  +   +W
Sbjct: 414 YNVKDSKYRPPGRKSPLAASMEKNW 438


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 341 STPSKKSPVDRPVTSLPAPFFVTSTTSEIGKCPF*KWSPVAT*P 210
           STPSK SPV +P    P P       + +   P  K SPV T P
Sbjct: 417 STPSKPSPVHKPT---PVPTTPVHKPTPVPTTPVQKPSPVPTTP 457


>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
           / glucose phosphomutase, putative strong similarity to
           SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
           (Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
           InterPro accession IPR006352: Phosphoglucosamine mutase
          Length = 583

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -2

Query: 231 ESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGCAATLPKRARATKHTTL 52
           +  +D  + L +     PS    +I++  +   +P+  + L G A ++P  A        
Sbjct: 299 DGDADRNMILGKRFFVTPSDSVAIIAANAIG-AIPYFSSGLKGVARSMPTSAALDVVAKS 357

Query: 51  LDTIFFLIPTG 19
           L+  FF +PTG
Sbjct: 358 LNLKFFEVPTG 368


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 69  SPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPP 197
           SPSP+ G      P + S   P  +  +    PA+P DPT PP
Sbjct: 137 SPSPNVGPTNPESPPLQSPPAPPASDPTNS-PPASPLDPTNPP 178


>At4g38060.2 68417.m05375 expressed protein
          Length = 136

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 181 SFGAAGPHLLDHAVHRGSLPEGILGWLRCHAPEEGEGDQ 65
           SFG++G   +D  V  G  PE  +GW   H P+    D+
Sbjct: 44  SFGSSGSESVD--VVAGDGPEWSVGWTEPHGPDFQSDDE 80


>At4g38060.1 68417.m05376 expressed protein
          Length = 125

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 181 SFGAAGPHLLDHAVHRGSLPEGILGWLRCHAPEEGEGDQ 65
           SFG++G   +D  V  G  PE  +GW   H P+    D+
Sbjct: 44  SFGSSGSESVD--VVAGDGPEWSVGWTEPHGPDFQSDDE 80


>At3g47620.1 68416.m05184 TCP family transcription factor, putative
           auxin-induced basic helix-loop-helix transcription
           factor - Gossypium hirsutum, EMBL:AF165924
          Length = 489

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -1

Query: 214 DLVLDAGGRVGSFGAAGPHLLDHAVHRGSLPEGILGWLRCHAPEEGEGDQTHHFTGHHFF 35
           ++++D G  VG  G    H   H  HR + P  +LG    H P++    Q    +    F
Sbjct: 10  NVIMDGGDSVGGGGGDDHHRHLHHHHRPTFPFQLLG---KHDPDDNHQQQPSPSSSSSLF 66

Query: 34  S 32
           S
Sbjct: 67  S 67


>At3g19780.1 68416.m02504 expressed protein
          Length = 1014

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 127 LPEGILGWLRCHAPEEGEGDQTHHFTGHHFFSDS 26
           L + + G ++     E + D  H FTG  FFSD+
Sbjct: 560 LKDNVNGEIKVSLHSEPKEDLVHKFTGSFFFSDA 593


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 69  SPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAP------KDPTRPPASSTRS 215
           S  PSS     ++P  P+GR    TA S+   P+ P         TRP  +++RS
Sbjct: 173 SRRPSSSGGPGSRPATPTGRSSTLTANSKSSRPSTPTSRATVSSATRPSLTNSRS 227


>At1g32160.1 68414.m03956 expressed protein
          Length = 406

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +1

Query: 280 KNGAGNDVTGRSTGDFFDGVENYIQSHDVXFKLPIADTQITVSPRNLDNDELTLNVKFNK 459
           +NG G  VT R++GD  D  EN+     V  + P+      +   +     +T++ +  K
Sbjct: 54  ENGRGRSVTVRASGD-EDSNENFAPLAPVELESPVGQLLEQILRTHPHLLPVTVDEQLEK 112

Query: 460 EGARSVGEARKAKLKKT 510
             A S  E+RKA    T
Sbjct: 113 FAAES--ESRKADSSST 127


>At1g31120.1 68414.m03808 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 796

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 283 NGAGNDVTGRSTGDFFDGVENYI 351
           NG GN++   ST D FD +E+ I
Sbjct: 681 NGNGNEIRNVSTFDTFDSIESVI 703


>At1g10550.1 68414.m01188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase related protein EXGT-A3
           GI:2154609 from [Arabidopsis thaliana]
          Length = 310

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -3

Query: 377 SLKXTSWD*M*FSTPSKKSPVDRPVTSLPAPFFVTSTTSEIGKCPF*KWSPVAT*PCT 204
           SL  T WD   ++T   K PV+       APF V+    E+  C     S   + PCT
Sbjct: 202 SLYVTVWDGSEWATKGGKYPVNYKY----APFVVSVADVELSGCSVNNGSSTGSGPCT 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,256
Number of Sequences: 28952
Number of extensions: 248337
Number of successful extensions: 821
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)