Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30323
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   3.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   5.3  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   7.0  

>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 130 TQNTKEIYPYQDRTVKEIVIHKDFNKGNLFYDIALLFLETPVIQPRTWEWRV 285
           T  T+E++ ++D +  E+V  KD       Y      +E  +  P T  WR+
Sbjct: 364 TFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDELDNPETRGWRI 415


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 358 PNLSF-PQPVAKHLTPAGARSLAGGRHATPTFGAESLES 245
           P +SF P   +++LTP  ++SLA       +F + S  S
Sbjct: 189 PTVSFSPASTSENLTPTSSKSLASNTSLVQSFNSASRSS 227


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 355 NLSFPQPVAKHLTPAGARSLAGGRHATPTFGAESLESRGTAELCRR 218
           NL F   + KHLTP+   + A      P F     +S G   +C+R
Sbjct: 510 NLDFSSVMRKHLTPSAFITTASFSTYNPEFSC--ADSFGRVIVCKR 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,565
Number of Sequences: 5004
Number of extensions: 51569
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)