Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30323
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 36 0.048
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741 35 0.063
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 33 0.26
10_06_0036 - 9914606-9915561,9916287-9916368 32 0.45
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 31 0.78
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 31 1.0
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 31 1.4
07_03_1295 + 25580090-25580986 29 3.2
04_04_0103 + 22808670-22810007 29 3.2
09_02_0495 + 9880714-9881196 29 4.2
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 29 5.5
12_02_1131 - 26358339-26360609 28 7.3
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 7.3
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 35.5 bits (78), Expect = 0.048
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = -3
Query: 606 PMPQATMPYWT*RFFS*SMGHTRGDPPSPXQVSCRAP 496
P P PY RFFS S+ +RG PSP Q S RAP
Sbjct: 51 PPPPPLTPY---RFFSSSVSESRGTSPSPKQESSRAP 84
>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
Length = 118
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 34 GGGSLIHPNVVLTAAHYVAAAKELKIRAGEWDTQNTKEIYPYQDRTV 174
G S++HPNV +T + A WDTQ TKE+ PY R +
Sbjct: 67 GYSSMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTKEL-PYLSRVL 112
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +3
Query: 213 PVLRHSSAVPRDSSDSAPNVGVACLPPARERAPA 314
P R V RDSS AP V C P ER PA
Sbjct: 311 PSTRERRPVTRDSSRKAPEVATMCRPSTAERRPA 344
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 616 LSAADAPGYDAVLDIAILLIVYGAHEGRPPVPPAGVLSGSPP 491
+ A+ AP + V A+ +YG H PP+PP V S PP
Sbjct: 134 IDASSAPCAEEVGGGALKRRLYGMHHLPPPLPPTSVASPPPP 175
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 218 NRFPLLKSLCITISLTVLS-*YGYISFVFCVSHSPAL 111
N F LLK LCIT+S LS Y Y+S V + P+L
Sbjct: 335 NTFLLLKYLCITLSAVTLSPSYDYLSLVSFLDACPSL 371
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 31.1 bits (67), Expect = 1.0
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Frame = +3
Query: 39 RLADPSERG-AHGRSLRCRR*GTEDQSRRMGHAEHEGD-ISVSRQDSQGN------RDTQ 194
+LA P+ RG A + + R T + ++R + + +S+S + S N R T
Sbjct: 64 KLAGPAPRGRAQTKPILISRSSTMENAQRSSRSSASPNRLSLSPRSSSSNTALTRTRSTN 123
Query: 195 GLQ*GEPVLRHSSAVPRDSSDSAPNVGVACLPPARERAPAGVRCFATGWGKDKFGKEG 368
P L S+ P S + P PP R +PA R AT G G G
Sbjct: 124 SSSRCSPPLSLQSSTPSRRSPTPPG-NKTLTPPRRSPSPASRRMSATSSGPTLNGTRG 180
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 422 LPEPVEEDAAGAVLPVALDVHVXXGGARQDTCXGDGGSPLVCPIDYEKNRYVQYGIVAWG 601
+PE E+DA + H GGAR G S + +D E+N V G+V G
Sbjct: 257 IPELEEDDAVVKEVSSEYSAH-GSGGARSRRSSIGGVSSSIAEVDEEENPVVDKGVVGGG 315
Query: 602 I 604
+
Sbjct: 316 V 316
>07_03_1295 + 25580090-25580986
Length = 298
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +3
Query: 15 EAERLRRGRLADPSERGAHGRSLRCRR*GTEDQSRRMGHAEHEGDISVSRQDSQGNR 185
EAE LRR A + A R R+ +Q RR GD + R S G R
Sbjct: 210 EAEALRRAAKARRAAAAARLAEARARKREAAEQGRRRDAENERGDNAARRSRSGGTR 266
>04_04_0103 + 22808670-22810007
Length = 445
Score = 29.5 bits (63), Expect = 3.2
Identities = 43/151 (28%), Positives = 57/151 (37%), Gaps = 1/151 (0%)
Frame = +3
Query: 111 QSRRMGHAEHEGDISVSRQDSQGNRDTQGLQ*GEPVLRHSSAVPRDSSDSAPNVGVACLP 290
QS+R+ H +S D+ TQ LR P D D PN G P
Sbjct: 273 QSKRLQHK-----MSARDADTWSRVITQEEALSRHALRSLHITPLDDDDDEPNEG----P 323
Query: 291 PARERAPAGVRCFATGWGKDKFGKEGRYQVIMKKVDVPVVDRNTCQSQLRRTRLGRFFQL 470
RE + A R G G G+E + + VP DR++ ++ + L
Sbjct: 324 TPRE-SHADKRKREVGGGGGGGGEEMQLSLPADIDVVPEADRSSIDELMKLY----YSCL 378
Query: 471 HSTFMCXGG-EPDKTPAGGTGGRPSCAP*TM 560
T GG E K A G GG S AP T+
Sbjct: 379 QGTDTDGGGGEQGKDVAAGAGGDGSVAPETV 409
>09_02_0495 + 9880714-9881196
Length = 160
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = -2
Query: 628 WSAVLSAADAPGYDAVLDIAILLIVYGAHEGRPPVPPAGVLSGS 497
+SA AAD PG I GA PP PPAG S S
Sbjct: 19 YSAATVAADTPGGSCPYPCLPPPIAGGAVNSYPPPPPAGSSSSS 62
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 492 GGEPDKTPAGGTGGRPSC 545
GG+P +T GG GGR C
Sbjct: 157 GGQPSRTATGGGGGRAMC 174
>12_02_1131 - 26358339-26360609
Length = 756
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 553 YGAHEGRPPVPPAGVLSGSPPXHMNVECNWKNRPSRV 443
Y E RPP+PP G PP H+ + +W R+
Sbjct: 576 YKLTESRPPIPPD---VGVPPVHVAGKMHWMGEQRRL 609
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 127 PIRRL*SSVP*RRQRSERP*APRSDGSASLPRR 29
PIRR S P RR RS R +PR D + + RR
Sbjct: 311 PIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRR 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,215,285
Number of Sequences: 37544
Number of extensions: 460268
Number of successful extensions: 1762
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1757
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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