Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30323
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    52   4e-07
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    46   4e-05
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    39   0.004
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    33   0.30 
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    28   8.7  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    28   8.7  
AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical ...    28   8.7  
AC017117-10|AAF16613.1|  171|Caenorhabditis elegans Hypothetical...    28   8.7  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 23/51 (45%), Positives = 30/51 (58%)
 Frame = +2

Query: 509 DTCXGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRT 661
           D+C GD G PL+C  D     +   G+V+WGIGC   G PGVY +V +  T
Sbjct: 235 DSCQGDSGGPLMCARD---GHWELTGVVSWGIGCARPGMPGVYGNVHSAST 282



 Score = 32.7 bits (71), Expect = 0.30
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 37  GGSLIHPNVVLTAAHYVAAAKELKIRAGEWDTQNTKEIYPYQDRTVKEIVIHKDFNKG-N 213
           GGSLI PN VLTAAH  A  +     +       +    P++   V  + IH  +N G  
Sbjct: 85  GGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSGSGSPHR---VTAVSIHPWYNIGFP 141

Query: 214 LFYDIALLFLETPV 255
             YD A++ +  PV
Sbjct: 142 SSYDFAIMRIHPPV 155


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 509 DTCXGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDVS 649
           D+C GD G P  C    E   +V  G+++WG GC +   PG+Y  V+
Sbjct: 206 DSCQGDSGGPFACR--REDGAFVLAGVISWGDGCAQKKQPGIYTMVA 250


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 515 CXGDGGSPLVCPIDYEKNRYVQYGIVAWGIG---CGEDGTPGVYVDVSNLRT 661
           C  D G+PL C +D E N+YVQ GIV+   G     ED +  V V+ S ++T
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVSGLYGREMDKEDNSTMVVVNCSEVQT 248


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 118 GEWDTQNTKEIYPYQDRTVKEIVIHKDFNKGNLFYDIALLFLE 246
           G+WD +  KE   Y+D  V++  + K+ N   + YD A+   E
Sbjct: 151 GQWDDRYLKEKAEYEDAMVRQETVQKELNIARVNYDNAVKIQE 193


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 165 QDSQGNRDTQGLQ*GEPVLRHSSAVPRDSSDSAPNVGVACLPPARERAPAG 317
           +DSQG R +     G   +  +S+ P  SS+S PN   + +P +    P G
Sbjct: 137 EDSQGQRSSPSSPTGSETVVSTSSPPELSSESTPNTSGSVIPTSPVFKPNG 187


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 476  DVHVXXGGARQDTCXGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPG 631
            D++   G A QD   G  G P    ++ E     QYG+     G GE G PG
Sbjct: 1014 DIYGPPGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPG 1065


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 476  DVHVXXGGARQDTCXGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPG 631
            D++   G A QD   G  G P    ++ E     QYG+     G GE G PG
Sbjct: 1271 DIYGPPGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPG 1322


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 476  DVHVXXGGARQDTCXGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPG 631
            D++   G A QD   G  G P    ++ E     QYG+     G GE G PG
Sbjct: 1270 DIYGPPGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPG 1321


>AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical
           protein Y43F8C.6 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 364 SFPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGA 260
           S P+ S P P + + T AG  +L    HA P  GA
Sbjct: 268 SGPSSSAPGPSSSYSTGAGGGALLSTGHAVPIMGA 302


>AC017117-10|AAF16613.1|  171|Caenorhabditis elegans Hypothetical
           protein F43C11.1 protein.
          Length = 171

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 376 WYLPSFPNLSFPQPVAKHLTPAGARSLAGGR---HATPTFGAESLESRG 239
           W++ SF N  FP+P A+  +   A  +   R   H   TF    +E  G
Sbjct: 81  WFMSSFENSEFPKPTAEKPSNNNAIDINAPRSTEHVEQTFSQFGIECDG 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,344
Number of Sequences: 27780
Number of extensions: 325656
Number of successful extensions: 1012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)