Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30323
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    31   0.009
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.26 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   7.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 506 QDTCXGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGE 616
           +D C  D G P++      K R V  GI++WG  CG+
Sbjct: 342 KDACQMDSGGPVLWQNPRTK-RLVNIGIISWGAECGK 377



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 37  GGSLIHPNVVLTAAHYV--AAAKELKIRAGEWDTQNTKEIYPYQDRTVKEIVIHKDFN 204
           G ++I    VLTAAH +      +L I  GE D  +  E       ++ +++IH  ++
Sbjct: 189 GATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYD 246


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 123 MGHAEHEGDISVSRQDSQGNRDTQGLQ*GEPVLR-HSSAVPRDSSDSAPNVGVACLPPAR 299
           +  A+  G+    R+DS  +         EPV+  +SS  P     SAP+   +  PPA+
Sbjct: 473 VAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAK 532

Query: 300 ERAPAG 317
             A AG
Sbjct: 533 GAAAAG 538


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
 Frame = +1

Query: 121 EWD-----TQNTKEIYPYQDRTVKEIVIHKDFNKGNLFYDIALL 237
           EWD      +  K+ YP  D    +I  +    +  LFY + L+
Sbjct: 200 EWDILGVPAERHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLI 243


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 644 VSNLRTGSTTRSPARDTILDP 706
           V N RTG   +  A   ILDP
Sbjct: 137 VVNFRTGIMQQDNAEQVILDP 157


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 644 VSNLRTGSTTRSPARDTILDP 706
           V N RTG   +  A   ILDP
Sbjct: 137 VVNFRTGIMQQDNAEQVILDP 157


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 644 VSNLRTGSTTRSPARDTILDP 706
           V N RTG   +  A   ILDP
Sbjct: 137 VVNFRTGIMQQDNAEQVILDP 157


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +3

Query: 9   KTEAERLRRGRLADPSERGAHGRSLRCRR*GTEDQSRRMGHAEHEGDISVSRQDSQGNR 185
           KT+ E   RG+     + G+ GR     R G  ++++         D     QD++ +R
Sbjct: 72  KTDIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDR 130


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 532 PPVPPAGVLSGSPP 491
           PP+P    +SG PP
Sbjct: 418 PPIPNMSNMSGMPP 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,512
Number of Sequences: 438
Number of extensions: 4299
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)