Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30323
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06740.1 68418.m00762 lectin protein kinase family protein co...    31   1.1  
At5g39380.1 68418.m04771 calmodulin-binding protein-related has ...    28   6.1  
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident...    28   8.0  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    28   8.0  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    28   8.0  

>At5g06740.1 68418.m00762 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 652

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -2

Query: 511 VLSGSPPXHMNVECNWKNRPSRVLLNWLWQVFR 413
           V+SG  P ++ V+ N +N  +  ++NWLW+++R
Sbjct: 526 VVSGKKPSYVLVKDN-QNNYNNSIVNWLWELYR 557


>At5g39380.1 68418.m04771 calmodulin-binding protein-related has
           weak similarity to calmodulin-binding proteins
          Length = 507

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 24  RLRRGRLADPSERGAHGRSLRCRR*GTEDQSRRMGHAE-HEGDISVSRQDSQGNRDTQGL 200
           R RRG + DP   G   R L+ RR       R +G  +  +  +  S +  +  R+ +  
Sbjct: 397 RFRRGTIVDPDTVGEKARKLKFRR------GRGLGEDKAQDAQVRRSFKKREDIREEEVN 450

Query: 201 Q*GEP-VLRHSSAVPRDSSDSAPNV 272
           + GE  VLRH     +D+     NV
Sbjct: 451 EDGEKVVLRHQDVQEKDAQGLFNNV 475


>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
           identical to COP1-Interacting Protein 7 (CIP7)
           GI:3327868 from [Arabidopsis thaliana]
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/83 (21%), Positives = 34/83 (40%)
 Frame = +3

Query: 117 RRMGHAEHEGDISVSRQDSQGNRDTQGLQ*GEPVLRHSSAVPRDSSDSAPNVGVACLPPA 296
           R+  H  H GD   S ++++GN +    Q    +L+ + + P +    +           
Sbjct: 440 RQRKHKSHNGDDDSSNKETKGNDNWDAFQ--NLLLKDNDSEPEELLRISSTALNMASEVV 497

Query: 297 RERAPAGVRCFATGWGKDKFGKE 365
           R+R P     F    G + +G+E
Sbjct: 498 RKREPPSDDSFLVAIGNEDWGRE 520


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 553 YGAHEGRPPVPPAGVLSGSPPXHMN 479
           Y  H+ RPPVPP     G P  + N
Sbjct: 27  YYQHQARPPVPPPTQPGGPPAWYSN 51


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 553 YGAHEGRPPVPPAGVLSGSPPXHMN 479
           Y  H+ RPPVPP     G P  + N
Sbjct: 27  YYQHQARPPVPPPTQPGGPPAWYSN 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,420
Number of Sequences: 28952
Number of extensions: 313592
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)