Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30322
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 122 6e-29
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 122 6e-29
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 1.3
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 1.7
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.1
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 5.1
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 6.7
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 8.9
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 8.9
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.9
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 8.9
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 122 bits (293), Expect = 6e-29
Identities = 53/83 (63%), Positives = 75/83 (90%)
Frame = +1
Query: 256 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIA 435
KGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A
Sbjct: 54 KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113
Query: 436 KIMRNRSMARYLSGSVKEILGTA 504
+ MR +S+A+ LSG+VKEILGTA
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTA 136
Score = 90.2 bits (214), Expect = 2e-19
Identities = 40/52 (76%), Positives = 45/52 (86%)
Frame = +2
Query: 98 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 253
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT D
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKD 52
Score = 31.5 bits (68), Expect = 0.10
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 510 VGCTVEGRPPHDLIDDINSG 569
VGCTV+G+ PHD+ +I++G
Sbjct: 139 VGCTVDGKNPHDVQKEIDNG 158
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 122 bits (293), Expect = 6e-29
Identities = 53/83 (63%), Positives = 75/83 (90%)
Frame = +1
Query: 256 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIA 435
KGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A
Sbjct: 54 KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113
Query: 436 KIMRNRSMARYLSGSVKEILGTA 504
+ MR +S+A+ LSG+VKEILGTA
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTA 136
Score = 90.2 bits (214), Expect = 2e-19
Identities = 40/52 (76%), Positives = 45/52 (86%)
Frame = +2
Query: 98 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 253
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT D
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKD 52
Score = 31.5 bits (68), Expect = 0.10
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 510 VGCTVEGRPPHDLIDDINSG 569
VGCTV+G+ PHD+ +I++G
Sbjct: 139 VGCTVDGKNPHDVQKEIDNG 158
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +1
Query: 265 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIM 444
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 445 RNRSMARYLSGSVKEI 492
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 500 VPRISFTEPERYRAIDLFLMIFAMP-TTSSREMLPL 396
V R+ ++PE DLFL I A+ TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 399 RQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 491
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 393 TQRQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 491
T+ H P + HC H + + PVP +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 521 STSNYCAVPRISFTEPERYRAIDLFLMIFAMPTTSSREMLPLCLIF 384
S + + PR T +R + + + P TSSR LPL +++
Sbjct: 216 SNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 375 FTVTGRLLKGSDDKGCCR 322
F VTG +L S D GC R
Sbjct: 297 FNVTGTILSSSGDDGCVR 314
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 177 DDVAPTSPPTHRKFTILI 124
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 473 ERYRAIDLFLMIFAMPTTSSREMLPLCLIFFCFLRSRG 360
E Y LFL+ F + TT +L L + FC + G
Sbjct: 15 EFYDCCGLFLLTFFLLTTCQLRILSLSINAFCVFGASG 52
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 556 SSIRSCGGLPSTVHPTTVLCQESLLLSQK 470
++ + C VHP V+C E +L SQK
Sbjct: 238 AATQKCPVCRRKVHPNKVICLEMMLGSQK 266
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 560 DVINKIMWRPALHSTSNYCAVPRISFTEPERYRAI 456
+V+ K WR ++ NYC I + +R R +
Sbjct: 351 EVVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKV 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,378
Number of Sequences: 5004
Number of extensions: 53830
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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