Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30322
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   122   2e-28
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    36   0.024
U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  122 bits (295), Expect = 2e-28
 Identities = 56/84 (66%), Positives = 74/84 (88%)
 Frame = +1

Query: 256 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIA 435
           KGLK+T +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ ++ IA
Sbjct: 54  KGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIA 113

Query: 436 KIMRNRSMARYLSGSVKEILGTAQ 507
           +IMR RSMA+ L G+VKEILGTAQ
Sbjct: 114 RIMRPRSMAKKLEGTVKEILGTAQ 137



 Score =  101 bits (243), Expect = 3e-22
 Identities = 46/60 (76%), Positives = 52/60 (86%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD*RVSRSLC 277
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT D +  +  C
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 510 VGCTVEGRPPHDLIDDINSG 569
           VGCT++G+ PHD+I+ I +G
Sbjct: 139 VGCTIDGQHPHDIIESIANG 158


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +1

Query: 442 MRNRSMARYLSGSVKEILGTAQ 507
           MR RSMA+ L G+VKEILGTAQ
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQ 22



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 510 VGCTVEGRPPHDLIDDINSG 569
           VGCT++G+ PHD+I+ I +G
Sbjct: 24  VGCTIDGQHPHDIIESIANG 43


>U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical
           protein T23B3.4 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
 Frame = -2

Query: 602 ILETFIHQWSNS-AVDVINKIMWRPALHSTSNYCAVPRISFTEPERYRAIDLFLMIFAMP 426
           + +TF  +  NS ++   + +  RP+  S S++ + PR SF      R+ +   ++ A  
Sbjct: 218 VSKTFQFKEKNSLSIPQTSGLSVRPSRSSFSSFFSTPRGSFDVTMLLRSTNQEKILIAKK 277

Query: 425 TTSSREMLPLCLIF-FCFLRSRGGSLRALMIRAAAEGTTAIW 303
              +R ++ L ++F FC++ S    L  L++R A    T +W
Sbjct: 278 KV-TRMLITLVIVFAFCWVPS---YLYWLLLRMAELAATDLW 315


>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 349 LKEPPRDRKKQKNIKH-NGNISLEDVVGIAKIMRNRSMARYLSGSVKEILGTAQ*LDVLW 525
           L++ P   KK  +      N+S+ D  GI +  +    +  + G   E + T + LDVL 
Sbjct: 184 LQQSPSPNKKSPSYSQVMSNVSVSDTSGILEDTKGGWKSPAVYGKSNESIHTRKQLDVLL 243

Query: 526 RAGRHMILLMTSTAEF 573
           R+ +  I +  +T+ F
Sbjct: 244 RSNQDEIPVDMNTSTF 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,360
Number of Sequences: 27780
Number of extensions: 314309
Number of successful extensions: 852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)