Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30322
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   132   2e-31
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   128   3e-30
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           128   3e-30
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c...    29   2.5  
At2g31890.1 68415.m03896 expressed protein                             29   3.3  
At5g62170.1 68418.m07804 expressed protein various predicted pro...    27   7.7  
At5g07210.1 68418.m00821 two-component responsive regulator fami...    27   7.7  
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ...    27   7.7  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  132 bits (318), Expect = 2e-31
 Identities = 63/82 (76%), Positives = 75/82 (91%)
 Frame = +1

Query: 256 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIA 435
           KGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV+ IA
Sbjct: 55  KGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIA 114

Query: 436 KIMRNRSMARYLSGSVKEILGT 501
           KIMR RS+A+ LSG+VKEILGT
Sbjct: 115 KIMRPRSIAKELSGTVKEILGT 136



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/51 (70%), Positives = 43/51 (84%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 250
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETA 51



 Score = 33.9 bits (74), Expect = 0.088
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 510 VGCTVEGRPPHDLIDDINSG 569
           VGCTV+G+ P DL ++INSG
Sbjct: 140 VGCTVDGKDPKDLQEEINSG 159


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  128 bits (309), Expect = 3e-30
 Identities = 61/82 (74%), Positives = 74/82 (90%)
 Frame = +1

Query: 256 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIA 435
           KGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV  IA
Sbjct: 55  KGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIA 114

Query: 436 KIMRNRSMARYLSGSVKEILGT 501
           +IMR RS+A+ LSG+V+EILGT
Sbjct: 115 RIMRPRSIAKELSGTVREILGT 136



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/51 (70%), Positives = 43/51 (84%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 250
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETA 51



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 510 VGCTVEGRPPHDLIDDINSG 569
           VGCTV+G+ P DL  +I  G
Sbjct: 140 VGCTVDGKDPKDLQQEIQEG 159


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  128 bits (309), Expect = 3e-30
 Identities = 61/82 (74%), Positives = 74/82 (90%)
 Frame = +1

Query: 256 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIA 435
           KGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV  IA
Sbjct: 55  KGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIA 114

Query: 436 KIMRNRSMARYLSGSVKEILGT 501
           +IMR RS+A+ LSG+V+EILGT
Sbjct: 115 RIMRPRSIAKELSGTVREILGT 136



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/51 (70%), Positives = 43/51 (84%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS 250
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETA 51



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 510 VGCTVEGRPPHDLIDDINSG 569
           VGCTV+G+ P D+  +I  G
Sbjct: 140 VGCTVDGKDPKDIQQEIQDG 159


>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to DEAD box
           protein DDX1 [Gallus gallus] GI:16323037,  ryanodine
           receptor [Caenorhabditis elegans] GI:1871447; contains
           Pfam profile PF00622: SPRY domain
          Length = 509

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 244 HK*LKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNI 408
           HK LK L     + V+  +    V+PS A ++  A        KK K+ K N N+
Sbjct: 172 HKKLKQLDCLTSVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNV 226


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 355 EPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRSMA 462
           +PP+ RKKQKN K     +LED  G+   +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142


>At5g62170.1 68418.m07804 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 703

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 269 ILRPFSHLWPWQCHHP 222
           IL+P  +L PW CH+P
Sbjct: 564 ILKPHINLKPWVCHYP 579


>At5g07210.1 68418.m00821 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 621

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 288 NCQLHSDLETLQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRK 139
           NC   SD  T+ S     +S+     +R R P  G  DD    S P  +K
Sbjct: 182 NCSFKSDSRTVNSTNGSCVSTDGSRKNRKRKPNGGPSDDGESMSQPAKKK 231


>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit, Arabidopsis thaliana (Ath-A)
          Length = 1088

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = -3

Query: 577 GQTPLLMSS-IRSCGGLPSTVHPTTVLCQESLLLS 476
           GQ+P+L++S +   GG+PS V+P ++L +   ++S
Sbjct: 731 GQSPVLVASTLLLNGGVPSNVNPASLLRESIQVIS 765


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,928
Number of Sequences: 28952
Number of extensions: 297745
Number of successful extensions: 788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)