Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30321
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0076 + 25381814-25381880,25382927-25382967,25383398-253835...    29   3.6  
06_01_0284 + 2087710-2088203,2088518-2088727,2089567-2089744           28   6.3  
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    28   6.3  
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    28   8.4  

>05_06_0076 +
           25381814-25381880,25382927-25382967,25383398-25383502,
           25383612-25383695,25384069-25384103,25384562-25384647,
           25385529-25385594,25385936-25385970
          Length = 172

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 138 KAKGVSGLIEVENPNRV 188
           K KG  GLIE+ENPN V
Sbjct: 72  KHKGTEGLIEIENPNLV 88


>06_01_0284 + 2087710-2088203,2088518-2088727,2089567-2089744
          Length = 293

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -1

Query: 256 SDSCGFSTSPRSFKLDN 206
           SD  GFSTS RSFKL N
Sbjct: 271 SDLLGFSTSARSFKLPN 287


>01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,
            5891941-5892073,5892629-5892732,5892867-5895780,
            5895876-5895965,5896251-5896355,5896633-5896740,
            5896826-5896876
          Length = 1334

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 285  EQLQPIRSFTLKVKRSKRALTSLDSPSFANNA 380
            E LQ IRS T  ++R+  + T+  SP+ AN++
Sbjct: 1274 ELLQQIRSKTFNLRRTNASKTNTSSPTTANSS 1305


>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 138 KAKGVSGLIEVENPNRV 188
           K KG  GLI++ENPN V
Sbjct: 66  KHKGTEGLIQIENPNLV 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,515
Number of Sequences: 37544
Number of extensions: 143369
Number of successful extensions: 240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)