Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30321
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)           29   2.8  
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   2.8  
SB_51055| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   8.5  

>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
          Length = 1224

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 316 SVKLLIGCSCSLAFYLFTFTSDSCGFSTSPRSF 218
           S KL IGC C+L  +   +T    GF TS + F
Sbjct: 52  SQKLAIGCMCALEVFRQLYTGPLKGFHTSLQGF 84


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 138 KAKGVSGLIEVENPNRVV 191
           K  GV  LIE+ENPNRV+
Sbjct: 136 KPTGVQALIEIENPNRVL 153


>SB_51055| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 456

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 328 RFTFSVKLLIGCSCSLAFYLFTFTSDSCGFS 236
           R   S+++ + CSC++ F  F     +CG S
Sbjct: 163 RVMTSLRVTLSCSCAMDFRKFPMDKQNCGIS 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,418,416
Number of Sequences: 59808
Number of extensions: 175537
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)