Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30321
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    30   1.7  
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ...    28   7.0  
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    28   7.0  
At5g46020.1 68418.m05659 expressed protein                             28   7.0  
At3g05155.1 68416.m00560 sugar transporter, putative similar to ...    28   7.0  

>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 249 LSD-VNVKR*NASEQLQPIRSFTLKVKRSKRALTSLDSPSFANNAKKQLSAERQRKNLKK 425
           +SD VNV    A  ++ P++   +KV + K A   L    ++   K+  ++E + K++K+
Sbjct: 549 ISDAVNVLTHTAKVEIPPVKYQNIKVHQKKYAEAMLQKQQYSGQVKE--ASELENKSMKE 606

Query: 426 ILQLKK 443
           + + KK
Sbjct: 607 VDESKK 612


>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 765

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 231 DVEKPQLSDVNVKR*NASEQLQ-PIRSFTLKVKRSKRALTSLDSPSFANNAKKQLSAERQ 407
           D E+ QL   N K  +  E+L+  ++    K++  +++L  LD      + KKQL A  +
Sbjct: 219 DAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSL--LDKDQILEDLKKQLQAVEE 276

Query: 408 RKNL 419
           RK +
Sbjct: 277 RKQI 280


>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 231 DVEKPQLSDVNVKR*NASEQLQ-PIRSFTLKVKRSKRALTSLDSPSFANNAKKQLSAERQ 407
           D E+ QL   N K  +  E+L+  ++    K++  +++L  LD      + KKQL A  +
Sbjct: 219 DAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSL--LDKDQILEDLKKQLQAVEE 276

Query: 408 RKNL 419
           RK +
Sbjct: 277 RKQI 280


>At5g46020.1 68418.m05659 expressed protein
          Length = 164

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 138 KAKGVSGLIEVENPNRV 188
           K KG   +IEV+NPNRV
Sbjct: 64  KKKGAEAVIEVDNPNRV 80


>At3g05155.1 68416.m00560 sugar transporter, putative similar to
           sugar-porter family protein 1 [Arabidopsis thaliana]
           GI:14585699; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 327

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 352 SEVSARLLR--FTFSVKLLIGCSCSLAFYLFTFTS 254
           +E++ + +R  FTFS +LL  C  + A+YL  F S
Sbjct: 143 AEITPKTVRGTFTFSNQLLQNCGVATAYYLGNFMS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,757
Number of Sequences: 28952
Number of extensions: 130883
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)