Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30320
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-...    48   2e-04
UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus ...    33   7.0  
UniRef50_A0CCD3 Cluster: Chromosome undetermined scaffold_167, w...    33   7.0  
UniRef50_Q197A2 Cluster: Putative uncharacterized protein; n=1; ...    32   9.3  

>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
           protein - Bombyx mori (Silk moth)
          Length = 272

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 21/30 (70%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   TNXXXXXXXXXPMRARPRHPEAVMCGTSFM 92
           TN         PMRARPRHPEAVMCGTSFM
Sbjct: 243 TNLLVLLLRQLPMRARPRHPEAVMCGTSFM 272


>UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Seryl-tRNA synthetase -
           Carsonella ruddii (strain PV)
          Length = 336

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +2

Query: 476 YNMSNYFIKILSCMLFYYVLKILERKVKHSQKNKIPV 586
           YN+SN+F   L+ ++ +Y+ KIL  K ++++ N IPV
Sbjct: 91  YNLSNFFFCCLNKIIDFYLTKILSLKFRYNEIN-IPV 126


>UniRef50_A0CCD3 Cluster: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 214

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -3

Query: 374 YKIEISKSLKYNS*FSIQPKHINSSIYYL**KYHIFDP 261
           YK  I K +KY S FS+  K   S  YYL  KY+ F P
Sbjct: 136 YKFVIQKQIKYQSQFSVYQK--QSKDYYLLIKYYCFAP 171


>UniRef50_Q197A2 Cluster: Putative uncharacterized protein; n=1;
           Aedes taeniorhynchus iridescent virus|Rep: Putative
           uncharacterized protein - Aedes taeniorhynchus
           iridescent virus
          Length = 150

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 493 II*HIVKHNFMGHWNLHIISNFVLYCHCTTLSEVDLPHN 377
           +I H+V+H FM HW+ + I N  +    T ++  DLP +
Sbjct: 95  LINHLVRHKFMAHWDENAIKNHKI---STVITAKDLPES 130


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,678,729
Number of Sequences: 1657284
Number of extensions: 10268132
Number of successful extensions: 19908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19900
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)