Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30320
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    29   0.40 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.53 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.7  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 201 NSQRSQCDTTSKTNTHQLYRQDKLRW 124
           NSQR++  TT+ TN  +LY QD   W
Sbjct: 20  NSQRTEFVTTTATNQVELYEQDGNGW 45


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 280 NITSLIQ*YYAVPD*RPRSLRSNTNKEFAKISMR 179
           +IT L   Y  V D R  SLR NTN+ F  + MR
Sbjct: 681 DITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMR 714


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 208  LYWNVRSGVSNLELHSIIGSK 270
            LY  VRSGV  L L  IIG++
Sbjct: 2865 LYTGVRSGVRGLALQPIIGAR 2885


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 228 APYVPIQIKNSQRSQCDTTSKTNTHQLYRQ 139
           +PY+P+ ++  Q+SQ     +   HQ  +Q
Sbjct: 159 SPYIPVPLQQQQQSQPQQQPQQQQHQQPQQ 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,043
Number of Sequences: 5004
Number of extensions: 48016
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)