Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30320
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82282-6|CAB05273.1|  147|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical...    29   2.6  
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z82282-6|CAB05273.1|  147|Caenorhabditis elegans Hypothetical
           protein T07G12.8 protein.
          Length = 147

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 452 PMPHKIVFYNMSNYFIKILSCMLFY-YVLKILERKVKHSQKNKIP 583
           P+P +I+FY  SN+ +      +F  Y L +  RK ++   N +P
Sbjct: 44  PVPIRIIFYFFSNFILFFYKIKIFMNYQLLLRNRKFQYMANNGVP 88


>AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical
           protein ZK973.1 protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 452 PMPHKIVFYNMSNYFIKILSCMLFYYVLKILERKVKHSQKNK 577
           P   K V++ M N++ + L+  +  Y +  +ERK+ +  K+K
Sbjct: 272 PFSRKSVYFGMKNFYQEALAYSIKNYFIPRIERKMANHLKDK 313


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
           protein Y113G7C.1 protein.
          Length = 1494

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 14  GTTIETTTNESQA*TSRGRYVWHIIYVVHVDSSCVTLHLNL 136
           GTT  TT +   A T+   ++ HI  V HV S+ +TL   L
Sbjct: 158 GTTANTTNSTKPAPTNPADFLNHITVVAHV-SNGITLQAGL 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187,925
Number of Sequences: 27780
Number of extensions: 273282
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)