Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30316
(442 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q86VL0 Cluster: TCEA2 protein; n=2; Homo sapiens|Rep: T... 49 4e-05
UniRef50_Q15560 Cluster: Transcription elongation factor A prote... 49 4e-05
UniRef50_P23193 Cluster: Transcription elongation factor A prote... 46 5e-04
UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep: Zgc:... 45 8e-04
UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1... 44 0.001
UniRef50_A2AW45 Cluster: Transcription elongation factor A (SII)... 42 0.004
UniRef50_O75764 Cluster: Transcription elongation factor A prote... 41 0.014
UniRef50_UPI00005A4643 Cluster: PREDICTED: similar to Transcript... 39 0.055
UniRef50_Q5C3N7 Cluster: SJCHGC09202 protein; n=1; Schistosoma j... 36 0.51
UniRef50_Q9FHK9 Cluster: Similarity to unknown protein; n=3; cor... 34 1.2
UniRef50_UPI000065D764 Cluster: Homolog of Homo sapiens "Transcr... 33 2.7
UniRef50_UPI0000E801F5 Cluster: PREDICTED: hypothetical protein;... 32 4.7
UniRef50_Q5DIP4 Cluster: PvdJ; n=19; root|Rep: PvdJ - Pseudomona... 32 4.7
UniRef50_A7RN30 Cluster: Predicted protein; n=2; Nematostella ve... 32 6.3
UniRef50_UPI00005A4212 Cluster: PREDICTED: similar to Ras-relate... 31 8.3
UniRef50_UPI000066108C Cluster: Homolog of Homo sapiens "Centrom... 31 8.3
UniRef50_Q891G3 Cluster: Membrane spanning protein; n=1; Clostri... 31 8.3
>UniRef50_Q86VL0 Cluster: TCEA2 protein; n=2; Homo sapiens|Rep:
TCEA2 protein - Homo sapiens (Human)
Length = 242
Score = 49.2 bits (112), Expect = 4e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++ +I ++L KM ++ + M I L +L TR+GM+VNALRK
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSA--EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQ 59
Query: 244 SKDEKLYRFVKH*LKTGK 297
S DE++ K +K+ K
Sbjct: 60 SSDEEVIALAKSLIKSWK 77
>UniRef50_Q15560 Cluster: Transcription elongation factor A protein
2; n=55; Coelomata|Rep: Transcription elongation factor
A protein 2 - Homo sapiens (Human)
Length = 299
Score = 49.2 bits (112), Expect = 4e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++ +I ++L KM ++ + M I L +L TR+GM+VNALRK
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSA--EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQ 59
Query: 244 SKDEKLYRFVKH*LKTGK 297
S DE++ K +K+ K
Sbjct: 60 SSDEEVIALAKSLIKSWK 77
>UniRef50_P23193 Cluster: Transcription elongation factor A protein
1; n=41; Eumetazoa|Rep: Transcription elongation factor
A protein 1 - Homo sapiens (Human)
Length = 301
Score = 45.6 bits (103), Expect = 5e-04
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 70 VEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSK 249
+E++V++ KK+ KM + + + + L++L TRIGM+VNA+RK S
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAA--GALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST 58
Query: 250 DEKLYRFVKH*LKTGK 297
DE++ K +K+ K
Sbjct: 59 DEEVTSLAKSLIKSWK 74
Score = 33.1 bits (72), Expect = 2.7
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPST 82
>UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep:
Zgc:77732 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 409
Score = 44.8 bits (101), Expect = 8e-04
Identities = 28/78 (35%), Positives = 38/78 (48%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M+ EED+++I KKL KM S + M + L L TRIGM+VN +RK
Sbjct: 1 MTREEDLLRIAKKLDKMVSRNNMDGALDLLRELKDFNMTLKL--LQDTRIGMSVNGIRKH 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
DE + K +K K
Sbjct: 59 CTDEDVVNLAKILIKNWK 76
>UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1;
n=7; Euteleostomi|Rep: Transcription elongation factor
XSII-K1 - Xenopus laevis (African clawed frog)
Length = 645
Score = 44.0 bits (99), Expect = 0.001
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M +EE+++KI ++L + SE T + Q + +N+ +L TR+G+TVN ++K
Sbjct: 1 MGLEEELLKIGRRLERRFSEGNTDRILELLKEL--QAIEVNVTLLRSTRVGVTVNKIKKK 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
S + K+ +K K
Sbjct: 59 SDERKVIELATAIIKDWK 76
>UniRef50_A2AW45 Cluster: Transcription elongation factor A (SII),
3; n=1; Mus musculus|Rep: Transcription elongation
factor A (SII), 3 - Mus musculus (Mouse)
Length = 183
Score = 42.3 bits (95), Expect = 0.004
Identities = 27/78 (34%), Positives = 39/78 (50%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M +EE++++I KKL KM S T M+I L L TRIG+ VN +RK
Sbjct: 1 MGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQL--LQTTRIGVAVNGVRKH 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
D+++ K +K K
Sbjct: 59 CSDKEVVSLAKVLIKNWK 76
>UniRef50_O75764 Cluster: Transcription elongation factor A protein
3; n=21; Eutheria|Rep: Transcription elongation factor A
protein 3 - Homo sapiens (Human)
Length = 348
Score = 40.7 bits (91), Expect = 0.014
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++++I KKL KM + T M+I L L TRIG+ VN +RK
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQL--LQTTRIGVAVNGVRKH 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
D+++ K +K K
Sbjct: 59 CSDKEVVSLAKVLIKNWK 76
Score = 34.3 bits (75), Expect = 1.2
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 228 CSEKI*QR*EVISLCKTLIKNWKKFLSTP 314
CS+K EV+SL K LIKNWK+ L +P
Sbjct: 59 CSDK-----EVVSLAKVLIKNWKRLLDSP 82
>UniRef50_UPI00005A4643 Cluster: PREDICTED: similar to Transcription
elongation factor A protein 2 (Transcription elongation
factor S-II protein 2) (Testis-specific S-II)
(Transcription elongation factor TFIIS.l); n=1; Canis
lupus familiaris|Rep: PREDICTED: similar to
Transcription elongation factor A protein 2
(Transcription elongation factor S-II protein 2)
(Testis-specific S-II) (Transcription elongation factor
TFIIS.l) - Canis familiaris
Length = 451
Score = 38.7 bits (86), Expect = 0.055
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 187 LDVLTKTRIGMTVNALRKSSKDEKLYRFVKH*LKTGK 297
L +L TR+GM+VNALRK S DE++ K +K+ K
Sbjct: 192 LHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK 228
>UniRef50_Q5C3N7 Cluster: SJCHGC09202 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09202 protein - Schistosoma
japonicum (Blood fluke)
Length = 229
Score = 35.5 bits (78), Expect = 0.51
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +1
Query: 76 EDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSKDE 255
E+ + ++L +M + + + L++LTKT +G+ +N +RK S+D
Sbjct: 2 EETEHVARRLDRMLKNKKIDDESALKYLKRLRNIEMTLEILTKTGVGIIINKIRKESEDP 61
Query: 256 KLYRFVKH*LKTGK 297
++ K+ +K K
Sbjct: 62 EVATLGKNMIKQWK 75
>UniRef50_Q9FHK9 Cluster: Similarity to unknown protein; n=3; core
eudicotyledons|Rep: Similarity to unknown protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 436
Score = 34.3 bits (75), Expect = 1.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 175 MAINLDVLTKTRIGMTVNALRKSSKDE 255
M++N+D+L T IG VN LRK S D+
Sbjct: 169 MSLNVDILKSTEIGKAVNGLRKHSSDK 195
>UniRef50_UPI000065D764 Cluster: Homolog of Homo sapiens
"Transcription elongation factor B polypeptide 3; n=1;
Takifugu rubripes|Rep: Homolog of Homo sapiens
"Transcription elongation factor B polypeptide 3 -
Takifugu rubripes
Length = 380
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +1
Query: 61 KMSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRK 240
+ V + +M+++ KLT TSE T + + I LD+L++T IG TVN+LR+
Sbjct: 4 RSDVVKKIMRLKLKLTD-TSESAT----LLKNLQKLKDLDITLDILSETGIGKTVNSLRR 58
>UniRef50_UPI0000E801F5 Cluster: PREDICTED: hypothetical protein;
n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 598
Score = 32.3 bits (70), Expect = 4.7
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 169 QTMAINLDVLTKTRIGMTVNALRK 240
Q + I+LD+LT+T IG TVN+ RK
Sbjct: 36 QDLDISLDILTETGIGKTVNSFRK 59
>UniRef50_Q5DIP4 Cluster: PvdJ; n=19; root|Rep: PvdJ - Pseudomonas
aeruginosa
Length = 4991
Score = 32.3 bits (70), Expect = 4.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 94 QKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVN 228
+K L K+ +EDG G+ Q AI DVL + R+G+T N
Sbjct: 3571 RKALPKIEAEDGLGEYVAPASEPERQLAAIWADVLGRERVGVTDN 3615
>UniRef50_A7RN30 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 727
Score = 31.9 bits (69), Expect = 6.3
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 67 SVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRK 240
SVE+ + KIQK+L D + + +++DVL +T IG T+N L+K
Sbjct: 3 SVEKAIQKIQKRLFC----DDIDARKVLKYIKYLEQLEVDVDVLKRTGIGKTINGLKK 56
>UniRef50_UPI00005A4212 Cluster: PREDICTED: similar to Ras-related
C3 botulinum toxin substrate 1 (p21-Rac1); n=1; Canis
lupus familiaris|Rep: PREDICTED: similar to Ras-related
C3 botulinum toxin substrate 1 (p21-Rac1) - Canis
familiaris
Length = 168
Score = 31.5 bits (68), Expect = 8.3
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M+ EE++++I +KL +M + M I L L T IG+ +N + KS
Sbjct: 1 MAQEEELLRIVRKLEEMVAIKNMEGALDLLKKLNSCQMPIQL--LQTTSIGVAINGVCKS 58
Query: 244 SKDEKLYR 267
D+K YR
Sbjct: 59 CSDKKDYR 66
>UniRef50_UPI000066108C Cluster: Homolog of Homo sapiens
"Centromeric protein E; n=1; Takifugu rubripes|Rep:
Homolog of Homo sapiens "Centromeric protein E -
Takifugu rubripes
Length = 601
Score = 31.5 bits (68), Expect = 8.3
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 NALRKSSKDEKLYRFVKH*LK-TGKSFCRHQ 315
N LRK SKD+K Y+ +K LK K C HQ
Sbjct: 558 NELRKMSKDKKKYKLLKEQLKDVQKLLCSHQ 588
>UniRef50_Q891G3 Cluster: Membrane spanning protein; n=1;
Clostridium tetani|Rep: Membrane spanning protein -
Clostridium tetani
Length = 212
Score = 31.5 bits (68), Expect = 8.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 123 FRCHFSKLFLYFHNIFFNAHFDYF 52
F +F+K+F YFH IFFN F F
Sbjct: 144 FVLNFNKVFTYFHKIFFNNDFWIF 167
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,949,701
Number of Sequences: 1657284
Number of extensions: 4351161
Number of successful extensions: 9037
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9032
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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