Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30316
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    29   0.24 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   0.73 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    24   9.0  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -2

Query: 255 LIFARFSQSIDSHSYSCFR*DVQVDSHCLKCFQKF*RFFLTRAVFRCHFSKLFLYFHNIF 76
           LIFARF + + S +Y         D     CF KF   ++    +   ++ ++ Y+  I+
Sbjct: 135 LIFARFDEELASKTYLVGSRLTLADIF-FTCFLKFGATYVLTKSYLAKYTHIYRYYQTIY 193

Query: 75  FNAHFD 58
             A  D
Sbjct: 194 HQAKLD 199


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 40  RDLDKIIKMSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTK--TRI 213
           ++   +  ++ EEDV   QKKLT M S     Q           T+   LD   K   +I
Sbjct: 168 KNTSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKI 227

Query: 214 GMTVNALRKSSKDEK 258
              V++++ S  +E+
Sbjct: 228 KEDVSSIKASLAEEQ 242


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 126  VFRCHFSKLFLYFHNIFFNAHFDYFV*ITHF 34
            V+   F  L  YF   +FNA +D+ + +  F
Sbjct: 1130 VYDISFGSLTFYFQKSYFNAIYDFLLKLKRF 1160


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 255  EVISLCKTLIKNWKKFLSTPN 317
            E +S+    +K+ K FLSTPN
Sbjct: 985  EALSVISEFLKDLKGFLSTPN 1005


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 321 SCLVSTKTFSSF*LVFYKAI*LLIFARFSQSIDSHSYSC 205
           SC  + K ++     FY+A  +++   + + ID  S+ C
Sbjct: 668 SCFYNEKVYTYLQSRFYRAPEIILGLEYGKEIDIWSFGC 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,483
Number of Sequences: 5004
Number of extensions: 20057
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)