Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30316
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0058 + 8662996-8663826                                           29   2.2  
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777...    28   3.8  

>10_05_0058 + 8662996-8663826
          Length = 276

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = +1

Query: 73  EEDVMKIQKKLTKMTSEDG-------TGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNA 231
           E++V KI+ KL  +  EDG       +            Q + +  + L  ++IG  ++ 
Sbjct: 76  EDEVEKIKTKLVAVVGEDGGNPRSDSSSSEAVVELLRALQAVPMTFETLEASKIGKAISG 135

Query: 232 LRKSSKDE 255
           LRK S ++
Sbjct: 136 LRKHSSEQ 143


>11_06_0325 +
           22376195-22377001,22377136-22377525,22377638-22377778,
           22377888-22378067,22378268-22378447,22378536-22378637,
           22378768-22378896,22379318-22379422,22379528-22379623
          Length = 709

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 208 RIGMTVNALRKSSKDEKLYRFVKH*LKTGKSFCRHQTRLRIME 336
           R+G  VNA R SS+ +KL +  K  L   K F R Q ++R  E
Sbjct: 384 RLGAGVNAGRASSEQKKLEKLEKEGL-IEKPFQRKQLKIRFPE 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,735,921
Number of Sequences: 37544
Number of extensions: 106474
Number of successful extensions: 192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)