Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30316
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39905| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)                  27   9.1  

>SB_39905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 202 KTRIGMTVNALRKSSKDEKLYRFVKH*LKTGK 297
           KTRIGM+VN +RK S +  +    K  +K  K
Sbjct: 16  KTRIGMSVNTMRKKSNNSNVQTLAKSLIKLWK 47


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 199  TKTRIGMTVNALRKSSKDEKLYRFVKH*LKTGKS 300
            T TRIG T+N LRK + +E L +  K  +K  +S
Sbjct: 2041 TTTRIGKTINLLRKKTNNESLAKRAKKLVKKWQS 2074


>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 144 FFLTRAVFRCHFSKLFLYFHNIFFN--AHFDYFV*ITHFPXKSRKYFAKI 1
           F +  AV   +F KL+ YFHN   N  ++  +   + H+    +  FA I
Sbjct: 180 FIIPMAVTGVYFYKLYRYFHNTDINVTSNPSFAYKLEHYKVTQKMVFAAI 229


>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
          Length = 1243

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +1

Query: 31  REVRDLDKIIKMSVEEDVMKIQKKLTKMTSE 123
           RE+RD+  ++  SV +++   +K ++K+  +
Sbjct: 201 REIRDVGNVVVQSVSKEIQDSEKSISKVIQD 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,250,197
Number of Sequences: 59808
Number of extensions: 139689
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)