Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30316
(442 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation ... 49 6e-06
CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein. 49 6e-06
BC050623-1|AAH50623.1| 242|Homo sapiens TCEA2 protein protein. 49 6e-06
BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongatio... 49 6e-06
AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongatio... 49 6e-06
X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation ... 46 8e-05
X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation ... 46 8e-05
M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation ... 46 8e-05
CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein. 46 8e-05
BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongatio... 46 8e-05
BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongatio... 46 8e-05
AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongatio... 42 7e-04
AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongatio... 42 7e-04
AL590548-3|CAI13200.1| 246|Homo sapiens transcription elongatio... 42 7e-04
AL590548-2|CAI13199.1| 82|Homo sapiens transcription elongatio... 42 7e-04
BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongatio... 41 0.002
AY540752-1|AAT44402.1| 154|Homo sapiens rhabdomyosarcoma antige... 41 0.002
AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongatio... 41 0.002
AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongatio... 41 0.002
X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation ... 35 0.14
AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongatio... 34 0.19
L47345-1|AAA75492.1| 772|Homo sapiens elongin A protein. 31 2.3
BC002883-1|AAH02883.1| 772|Homo sapiens transcription elongatio... 31 2.3
AL031295-2|CAB40157.1| 772|Homo sapiens transcription elongatio... 31 2.3
>D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation
factor S-II, hS-II-T1 protein.
Length = 299
Score = 49.2 bits (112), Expect = 6e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++ +I ++L KM ++ + M I L +L TR+GM+VNALRK
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSA--EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQ 59
Query: 244 SKDEKLYRFVKH*LKTGK 297
S DE++ K +K+ K
Sbjct: 60 SSDEEVIALAKSLIKSWK 77
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 64 EVIALAKSLIKSWKKLL 80
>CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein.
Length = 299
Score = 49.2 bits (112), Expect = 6e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++ +I ++L KM ++ + M I L +L TR+GM+VNALRK
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSA--EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQ 59
Query: 244 SKDEKLYRFVKH*LKTGK 297
S DE++ K +K+ K
Sbjct: 60 SSDEEVIALAKSLIKSWK 77
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 64 EVIALAKSLIKSWKKLL 80
>BC050623-1|AAH50623.1| 242|Homo sapiens TCEA2 protein protein.
Length = 242
Score = 49.2 bits (112), Expect = 6e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++ +I ++L KM ++ + M I L +L TR+GM+VNALRK
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSA--EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQ 59
Query: 244 SKDEKLYRFVKH*LKTGK 297
S DE++ K +K+ K
Sbjct: 60 SSDEEVIALAKSLIKSWK 77
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 64 EVIALAKSLIKSWKKLL 80
>BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 49.2 bits (112), Expect = 6e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++ +I ++L KM ++ + M I L +L TR+GM+VNALRK
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSA--EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQ 59
Query: 244 SKDEKLYRFVKH*LKTGK 297
S DE++ K +K+ K
Sbjct: 60 SSDEEVIALAKSLIKSWK 77
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 64 EVIALAKSLIKSWKKLL 80
>AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 49.2 bits (112), Expect = 6e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++ +I ++L KM ++ + M I L +L TR+GM+VNALRK
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSA--EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQ 59
Query: 244 SKDEKLYRFVKH*LKTGK 297
S DE++ K +K+ K
Sbjct: 60 SSDEEVIALAKSLIKSWK 77
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 64 EVIALAKSLIKSWKKLL 80
>X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 45.6 bits (103), Expect = 8e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 70 VEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSK 249
+E++V++ KK+ KM + + + + L++L TRIGM+VNA+RK S
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAA--GALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST 58
Query: 250 DEKLYRFVKH*LKTGK 297
DE++ K +K+ K
Sbjct: 59 DEEVTSLAKSLIKSWK 74
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPST 82
>X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 45.6 bits (103), Expect = 8e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 70 VEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSK 249
+E++V++ KK+ KM + + + + L++L TRIGM+VNA+RK S
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAA--GALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST 58
Query: 250 DEKLYRFVKH*LKTGK 297
DE++ K +K+ K
Sbjct: 59 DEEVTSLAKSLIKSWK 74
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPST 82
>M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation
factor SII protein.
Length = 301
Score = 45.6 bits (103), Expect = 8e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 70 VEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSK 249
+E++V++ KK+ KM + + + + L++L TRIGM+VNA+RK S
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAA--GALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST 58
Query: 250 DEKLYRFVKH*LKTGK 297
DE++ K +K+ K
Sbjct: 59 DEEVTSLAKSLIKSWK 74
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPST 82
>CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein.
Length = 301
Score = 45.6 bits (103), Expect = 8e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 70 VEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSK 249
+E++V++ KK+ KM + + + + L++L TRIGM+VNA+RK S
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAA--GALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST 58
Query: 250 DEKLYRFVKH*LKTGK 297
DE++ K +K+ K
Sbjct: 59 DEEVTSLAKSLIKSWK 74
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPST 82
>BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 45.6 bits (103), Expect = 8e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 70 VEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSK 249
+E++V++ KK+ KM + + + + L++L TRIGM+VNA+RK S
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAA--GALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST 58
Query: 250 DEKLYRFVKH*LKTGK 297
DE++ K +K+ K
Sbjct: 59 DEEVTSLAKSLIKSWK 74
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPST 82
>BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 45.6 bits (103), Expect = 8e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 70 VEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKSSK 249
+E++V++ KK+ KM + + + + L++L TRIGM+VNA+RK S
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAA--GALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQST 58
Query: 250 DEKLYRFVKH*LKTGK 297
DE++ K +K+ K
Sbjct: 59 DEEVTSLAKSLIKSWK 74
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPST 82
>AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 272
Score = 42.3 bits (95), Expect = 7e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 169 QTMAINLDVLTKTRIGMTVNALRKSSKDEKLYRFVKH*LKTGK 297
+ M I L +L TR+GM+VNALRK S DE++ K +K+ K
Sbjct: 8 KAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK 50
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 37 EVIALAKSLIKSWKKLL 53
>AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 270
Score = 42.3 bits (95), Expect = 7e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 169 QTMAINLDVLTKTRIGMTVNALRKSSKDEKLYRFVKH*LKTGK 297
+ M I L +L TR+GM+VNALRK S DE++ K +K+ K
Sbjct: 8 KAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK 50
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 37 EVIALAKSLIKSWKKLL 53
>AL590548-3|CAI13200.1| 246|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 246
Score = 42.3 bits (95), Expect = 7e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 169 QTMAINLDVLTKTRIGMTVNALRKSSKDEKLYRFVKH*LKTGK 297
+ M I L +L TR+GM+VNALRK S DE++ K +K+ K
Sbjct: 8 KAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK 50
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 37 EVIALAKSLIKSWKKLL 53
>AL590548-2|CAI13199.1| 82|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 82
Score = 42.3 bits (95), Expect = 7e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 169 QTMAINLDVLTKTRIGMTVNALRKSSKDEKLYRFVKH*LKTGK 297
+ M I L +L TR+GM+VNALRK S DE++ K +K+ K
Sbjct: 8 KAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK 50
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFL 305
EVI+L K+LIK+WKK L
Sbjct: 37 EVIALAKSLIKSWKKLL 53
>BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++++I KKL KM + T M+I L L TRIG+ VN +RK
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQL--LQTTRIGVAVNGVRKH 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
D+++ K +K K
Sbjct: 59 CSDKEVVSLAKVLIKNWK 76
Score = 34.3 bits (75), Expect = 0.19
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 228 CSEKI*QR*EVISLCKTLIKNWKKFLSTP 314
CS+K EV+SL K LIKNWK+ L +P
Sbjct: 59 CSDK-----EVVSLAKVLIKNWKRLLDSP 82
>AY540752-1|AAT44402.1| 154|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.22 protein.
Length = 154
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++++I KKL KM + T M+I L L TRIG+ VN +RK
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQL--LQTTRIGVAVNGVRKH 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
D+++ K +K K
Sbjct: 59 CSDKEVVSLAKVLIKNWK 76
Score = 34.3 bits (75), Expect = 0.19
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 228 CSEKI*QR*EVISLCKTLIKNWKKFLSTP 314
CS+K EV+SL K LIKNWK+ L +P
Sbjct: 59 CSDK-----EVVSLAKVLIKNWKRLLDSP 82
>AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++++I KKL KM + T M+I L L TRIG+ VN +RK
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQL--LQTTRIGVAVNGVRKH 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
D+++ K +K K
Sbjct: 59 CSDKEVVSLAKVLIKNWK 76
Score = 34.3 bits (75), Expect = 0.19
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 228 CSEKI*QR*EVISLCKTLIKNWKKFLSTP 314
CS+K EV+SL K LIKNWK+ L +P
Sbjct: 59 CSDK-----EVVSLAKVLIKNWKRLLDSP 82
>AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +1
Query: 64 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
M EE++++I KKL KM + T M+I L L TRIG+ VN +RK
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQL--LQTTRIGVAVNGVRKH 58
Query: 244 SKDEKLYRFVKH*LKTGK 297
D+++ K +K K
Sbjct: 59 CSDKEVVSLAKVLIKNWK 76
Score = 34.3 bits (75), Expect = 0.19
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 228 CSEKI*QR*EVISLCKTLIKNWKKFLSTP 314
CS+K EV+SL K LIKNWK+ L +P
Sbjct: 59 CSDK-----EVVSLAKVLIKNWKRLLDSP 82
>X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation
factor protein.
Length = 280
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 205 TRIGMTVNALRKSSKDEKLYRFVKH*LKTGK 297
TRIGM+VNA+RK S DE++ K +K+ K
Sbjct: 23 TRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 53
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 255 EVISLCKTLIKNWKKFLSTPNT 320
EV SL K+LIK+WKK L P+T
Sbjct: 40 EVTSLAKSLIKSWKKLLDGPST 61
>AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongation
factor TFIIS.h protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.19
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 228 CSEKI*QR*EVISLCKTLIKNWKKFLSTP 314
CS+K EV+SL K LIKNWK+ L +P
Sbjct: 31 CSDK-----EVVSLAKVLIKNWKRLLDSP 54
>L47345-1|AAA75492.1| 772|Homo sapiens elongin A protein.
Length = 772
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 172 TMAINLDVLTKTRIGMTVNALRK 240
T+ I +D+L +T +G TVN+LRK
Sbjct: 35 TLPITVDILAETGVGKTVNSLRK 57
>BC002883-1|AAH02883.1| 772|Homo sapiens transcription elongation
factor B (SIII), polypeptide 3 (110kDa, elongin A)
protein.
Length = 772
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 172 TMAINLDVLTKTRIGMTVNALRK 240
T+ I +D+L +T +G TVN+LRK
Sbjct: 35 TLPITVDILAETGVGKTVNSLRK 57
>AL031295-2|CAB40157.1| 772|Homo sapiens transcription elongation
factor B (SIII), polypeptide 3 (110kDa, elongin A)
protein.
Length = 772
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 172 TMAINLDVLTKTRIGMTVNALRK 240
T+ I +D+L +T +G TVN+LRK
Sbjct: 35 TLPITVDILAETGVGKTVNSLRK 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,179,713
Number of Sequences: 237096
Number of extensions: 637565
Number of successful extensions: 4684
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4684
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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