Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30316
         (442 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X53670-1|CAA37710.1|  313|Drosophila melanogaster protein ( Dros...    88   4e-18
L26091-1|AAA92864.2|  313|Drosophila melanogaster transcription ...    88   4e-18
AY051843-1|AAK93267.1|  313|Drosophila melanogaster LD34766p pro...    88   4e-18
AE014134-2559|AAF53436.1|  313|Drosophila melanogaster CG3710-PA...    88   4e-18

>X53670-1|CAA37710.1|  313|Drosophila melanogaster protein (
           Drosophila gene forRNA polymerase II elongation factor
           DmS-II. ).
          Length = 313

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +1

Query: 64  MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
           MSVEE+V +IQKK++KM S DGTGQ          QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1   MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59

Query: 244 SKDEKLYRFVKH*LKTGKSF 303
           SKD+++    K  +K  K F
Sbjct: 60  SKDDEVIALAKTLIKNWKRF 79



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 255 EVISLCKTLIKNWKKFLSTPNTT 323
           EVI+L KTLIKNWK+FL++P  T
Sbjct: 64  EVIALAKTLIKNWKRFLASPAPT 86


>L26091-1|AAA92864.2|  313|Drosophila melanogaster transcription
           elongation factor protein.
          Length = 313

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +1

Query: 64  MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
           MSVEE+V +IQKK++KM S DGTGQ          QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1   MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59

Query: 244 SKDEKLYRFVKH*LKTGKSF 303
           SKD+++    K  +K  K F
Sbjct: 60  SKDDEVIALAKTLIKNWKRF 79



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 255 EVISLCKTLIKNWKKFLSTPNTT 323
           EVI+L KTLIKNWK+FL++P  T
Sbjct: 64  EVIALAKTLIKNWKRFLASPAPT 86


>AY051843-1|AAK93267.1|  313|Drosophila melanogaster LD34766p
           protein.
          Length = 313

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +1

Query: 64  MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
           MSVEE+V +IQKK++KM S DGTGQ          QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1   MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59

Query: 244 SKDEKLYRFVKH*LKTGKSF 303
           SKD+++    K  +K  K F
Sbjct: 60  SKDDEVIALAKTLIKNWKRF 79



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 255 EVISLCKTLIKNWKKFLSTPNTT 323
           EVI+L KTLIKNWK+FL++P  T
Sbjct: 64  EVIALAKTLIKNWKRFLASPAPT 86


>AE014134-2559|AAF53436.1|  313|Drosophila melanogaster CG3710-PA
           protein.
          Length = 313

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +1

Query: 64  MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 243
           MSVEE+V +IQKK++KM S DGTGQ          QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1   MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59

Query: 244 SKDEKLYRFVKH*LKTGKSF 303
           SKD+++    K  +K  K F
Sbjct: 60  SKDDEVIALAKTLIKNWKRF 79



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 255 EVISLCKTLIKNWKKFLSTPNTT 323
           EVI+L KTLIKNWK+FL++P  T
Sbjct: 64  EVIALAKTLIKNWKRFLASPAPT 86


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,318,604
Number of Sequences: 53049
Number of extensions: 197517
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)