Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30316
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    28   2.6  
AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine re...    27   8.0  

>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 222 SHSYSCFR*DVQVDSHCLKC 163
           SHS  C R DV  D+HC KC
Sbjct: 554 SHSPKCPRRDVPRDTHCPKC 573


>AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein12 protein.
          Length = 291

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 293 PVFN*CFTKRYNFSSLLDFLRALTVIPILVFVKTSK 186
           P+F    T RY F S +  L  LT+I  +V ++  K
Sbjct: 154 PLFAFALTSRYTFKSSMLILSLLTLIIYIVMIRIFK 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,150,127
Number of Sequences: 27780
Number of extensions: 110978
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)