Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30316
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05140.1 68418.m00545 transcription elongation factor-related...    34   0.037
At4g00320.1 68417.m00041 F-box family protein contains F-box dom...    26   9.8  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    26   9.8  

>At5g05140.1 68418.m00545 transcription elongation factor-related
           low similarity to transcription elongation factor
           TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus
           musculus] GI:6009624
          Length = 436

 Score = 34.3 bits (75), Expect = 0.037
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 175 MAINLDVLTKTRIGMTVNALRKSSKDE 255
           M++N+D+L  T IG  VN LRK S D+
Sbjct: 169 MSLNVDILKSTEIGKAVNGLRKHSSDK 195


>At4g00320.1 68417.m00041 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 507

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 25  FXREVRDLDKII---KMSVEEDVMKIQKKLTKM 114
           F   + DL+K+I       +EDVMK+ KKL K+
Sbjct: 451 FLETMPDLEKVILYYNTPEDEDVMKVFKKLKKL 483


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 1   NFSKIFSXFXREVRDLDKIIKMSVEEDVMKIQKKLTKMTSED 126
           +F ++   +   +R L +  K S  ++V++ QKK   + SED
Sbjct: 82  SFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSED 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,585,198
Number of Sequences: 28952
Number of extensions: 95920
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)