Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30315
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   142   3e-35
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   142   4e-35
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   5.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   7.5  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   9.9  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  142 bits (345), Expect = 3e-35
 Identities = 65/90 (72%), Positives = 78/90 (86%)
 Frame = +2

Query: 254 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 433
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 434 KIRKLFNLSKEDDVRRYVVKRVLPARKEKK 523
           KIR+ FNLSKEDDVR++V++R +  +KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  110 bits (265), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 67/98 (68%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFV 311
           FPM QGVL   RVRLL+ +A H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/33 (60%), Positives = 22/33 (66%)
 Frame = +1

Query: 487 RQTRAPSQEGKENAKPRHKAPKIQRLVTPVVLQ 585
           R+   P +EGK   KP  KAPKIQRLVTP  LQ
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQ 188


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  142 bits (344), Expect = 4e-35
 Identities = 64/90 (71%), Positives = 78/90 (86%)
 Frame = +2

Query: 254 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 433
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 434 KIRKLFNLSKEDDVRRYVVKRVLPARKEKK 523
           KIR+ FNLSKEDDVR++V++R +  +KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  110 bits (265), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 67/98 (68%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFV 311
           FPM QGVL   RVRLL+ +A H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/33 (60%), Positives = 22/33 (66%)
 Frame = +1

Query: 487 RQTRAPSQEGKENAKPRHKAPKIQRLVTPVVLQ 585
           R+   P +EGK   KP  KAPKIQRLVTP  LQ
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQ 188


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +3

Query: 30  VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRV--AGGNDKQGFP 203
           + Y A    K+   VD H    F EK +   +EA +L  +      RV     ++ + F 
Sbjct: 317 IPYSALPFSKI--AVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEPENF- 373

Query: 204 MKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFVDVL 320
             + +   ++  LL SKA ++   AAM  EN +    V+
Sbjct: 374 --EDIKNIAQTSLLYSKALYLQTLAAMNTENTDDEAPVI 410


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 472 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 338
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 38  PGNGMPEVVRSGGRAQASYLLR 103
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,570
Number of Sequences: 5004
Number of extensions: 53607
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)