Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30313
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    27   0.13 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.71 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   1.6  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   1.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   2.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   3.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   5.0  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   8.7  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +1

Query: 214 VRSQ-CYRVNATAPDSRRPTIREPTIQDPAPTQRIR--PSPALDTTKSYRVRSLSRPGRT 384
           + SQ C   ++ + DS   ++ +P   + A    I   PSP  D   +   R        
Sbjct: 372 INSQSCPITSSGSTDSSSQSVEDPQQVEAAIVHLIANLPSPGSDQRSTPSPRVYGNVNEN 431

Query: 385 RFRNCASPTTDSPLRSSIRRPTNSPNRLPT--LITNRLTKS 501
           +  +C++PT +SP +   +  T +  R P+  L TN  T S
Sbjct: 432 Q--DCSTPTENSPTKPYYKLKTANNKRPPSTELGTNIYTSS 470


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 312 YPPLTSVGHDEELSRPFIKP--AWPNPLQELRESDNRQSSTVFNPPAYEQSEPP 467
           YP +T+       +R  +K   A P P+Q  + +       V+NPP + Q   P
Sbjct: 243 YPAVTATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATP 296


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 348 LSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPPSD 473
           L+RP  K   PN  +  ++ DN   S   N      SEPP++
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNFSAEEN----SVSEPPAN 167


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 375  WPNPLQ-ELRESDNRQSSTVFNPPAYEQSEPPSDTNNEQ 488
            WP   + E ++  ++ S++ +  P      PPS TN+ Q
Sbjct: 1146 WPKSAKCEEKKPGHKPSTSSWQKPTKPSYRPPSTTNHWQ 1184


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 348 LSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPPSD 473
           L+RP  K   PN  +  ++ DN   S   N      SEPP++
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNFSAEEN----SVSEPPAN 167


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 348 LSRPFIKPAWPNPLQELRESDNRQSSTVFNPPAYEQSEPPSD 473
           L+RP  K   PN  +  ++ DN   S   N      SEPP++
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNFSAEEN----SVSEPPAN 167


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 246 SPRFPPPYNPGTDDPGSGTHAAYPP 320
           SP   PP+NP    P S     Y P
Sbjct: 16  SPLLTPPHNPAYSPPPSYCDPWYNP 40


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 291 GSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPA 446
           G+ T    PP +S+ +   ++     P  P PL +   S  +QS    +P A
Sbjct: 66  GASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAPAS--QQSLDASDPDA 115


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 291 GSGTHAAYPPLTSVGHDEELSRPFIKPAWPNPLQELRESDNRQSSTVFNPPA 446
           G+ T    PP +S+ +   ++     P  P PL +   S  +QS    +P A
Sbjct: 222 GASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAPAS--QQSLDASDPDA 271


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 412 TDSPLRSSIRRP--TNSPNRLPTLITNRLTKSP 504
           ++ P+    RR    NS N L TLI + + K P
Sbjct: 37  SNKPIMEKRRRARINNSLNELKTLILDAMKKDP 69


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 432 FNPPAYEQSEPPSDTNNEQADKEPDRYRCTTKTRSR 539
           +N P Y  S     T  E  + +P R + T   R+R
Sbjct: 57  YNAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRAR 92


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +3

Query: 381 NPLQELRESDNRQSSTVFNPPAYEQSEPPSDTNNEQADKEPDRY 512
           +P  EL +SD     T   PP       P   + E+  KE   Y
Sbjct: 43  HPETELSDSDCDLDVTGTPPPLDCSKNSPEKESEEKKSKEKPPY 86


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 369 PAWPNPLQELRESDNRQSSTVFNPP 443
           P WP     L  S + Q+S    PP
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPP 103


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 432 FNPPAYEQSEPPSDTNNEQADKEPDRYRCTTKTRSR 539
           +N P Y  S     T  E  + +P R + T   R+R
Sbjct: 48  YNAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRAR 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,122
Number of Sequences: 336
Number of extensions: 2357
Number of successful extensions: 25
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)