Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30311
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0302 - 21829991-21830626,21831864-21832784                       28   4.8  
08_02_1150 + 24709071-24710774                                         28   6.4  
11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997     27   8.5  

>02_04_0302 - 21829991-21830626,21831864-21832784
          Length = 518

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 148 CGGVEIGFISLPVAWILFLYHFNLKL 225
           C G+ +G  +L +A    LYHF+ KL
Sbjct: 451 CPGINLGLANLELALASLLYHFDWKL 476


>08_02_1150 + 24709071-24710774
          Length = 567

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 472 VFVWNSLT*ACRFERRISIL*PIYSEIHSI 561
           V V+ +L  ACR  +R  +   + SEIHS+
Sbjct: 495 VMVFGALLGACRMHKRFDVAERVQSEIHSL 524


>11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997
          Length = 512

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 148 CGGVEIGFISLPVAWILFLYHFNLKL 225
           C G+  G ++L +     LYHFN +L
Sbjct: 448 CPGIAFGLVNLELVLASLLYHFNWEL 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,362
Number of Sequences: 37544
Number of extensions: 196594
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)