Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30311
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    29   3.1  
At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At4g22170.1 68417.m03205 F-box family protein contains F-box dom...    27   7.1  

>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 101 NEQFKLSWISHGFFKSQFFLFFYCLDG 21
           N+ F+ SWI+HGF  ++ FL F C  G
Sbjct: 439 NDSFE-SWIAHGFMCNKIFLLF-CKQG 463


>At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 504

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 442 CNIKKDFYTLVFVWNSLT*ACRFERRISIL*PIYSEI 552
           C  K++ Y  VF +N+L  AC  E R+S     Y E+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282


>At4g22170.1 68417.m03205 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 363

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 141 IVMWGCRDWFYFVARRVDS 197
           +V+WG RDW  F +++ D+
Sbjct: 169 VVLWGLRDWCVFYSKKGDT 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,650
Number of Sequences: 28952
Number of extensions: 179761
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)