Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30308
(634 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 27 0.20
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 1.9
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 7.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.9
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 26.6 bits (56), Expect = 0.20
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 10 APDARVTSHQTPEAPLPTHSAPESRAPPHHAPSIPLHPLDSRVPPHLLDSRVSP-HSMNS 186
AP + + HQ+P+AP S+ PP P P P S+ P ++ S S H M
Sbjct: 20 APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP--PGAP-PSQNPSQMMISPASGIHQMQQ 76
Query: 187 RVSLHAM 207
+ H +
Sbjct: 77 LLQQHIL 83
Score = 26.6 bits (56), Expect = 0.20
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 40 TPEAPLPTHSAPESRAPPHHAPSIPLHPLDSRVPPHLLDSRVSPHSMNSRVSL--HAMDS 213
+PE P + S+ S P + + L S+ PP+ S+VSP SM++ VS
Sbjct: 352 SPEPPKSSESSTGSSIPKLNLSTA----LMSQPPPNFGVSQVSPVSMSALVSAVRSPAGG 407
Query: 214 RIPPHHLESRIPPVRHRTDLDSI 282
++PP + +PP+ + +++ +
Sbjct: 408 QLPP-SAGAPMPPIPNMSNMSGM 429
Score = 24.6 bits (51), Expect = 0.81
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 219 STPSFGIAHSTSPSPHGPGFNPARLSVSPANQSMQTTKSRSPSAGPRPSTPGS 377
S P ++ + P P F ++ VSP + S + RSP+ G P + G+
Sbjct: 366 SIPKLNLSTALMSQPP-PNFGVSQ--VSPVSMSALVSAVRSPAGGQLPPSAGA 415
Score = 23.4 bits (48), Expect = 1.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 573 FYLRMPQRLRRWSGRAGAGDPTVIDTPVRF 484
FY R PQR +G + PT+ +P +
Sbjct: 580 FYKRRPQRACSTTGGVPSKSPTLTHSPTMY 609
Score = 22.6 bits (46), Expect = 3.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 523 AGSPGPTPEPLRHPK 567
+G+PGP P P + P+
Sbjct: 18 SGAPGPQPSPHQSPQ 32
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.4 bits (48), Expect = 1.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 437 CRDSR*S----LHSDKSRS*NRTGVSITVGSPAPARPDQ 541
CR+SR + L D S + G S + G P P RP++
Sbjct: 1333 CRNSRRTPVPRLAQDSSEDESYRGPSASGGRPVPERPER 1371
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 106 SIPLHPLDSRVPPHLLDSRVSPHSMN 183
S+ P+ +P H LDSRV + N
Sbjct: 152 SVIFPPVYEILPQHHLDSRVIQEAQN 177
Score = 21.0 bits (42), Expect = 9.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1
Query: 217 IPPHHLESRI 246
+P HHL+SR+
Sbjct: 162 LPQHHLDSRV 171
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Frame = +1
Query: 1 PLHAPDARVTSHQTPEAPLPTHSAPESRAPPH 96
P H+P +T+ T + P AP H
Sbjct: 1366 PPHSPQITLTATTTNSLTMKVRPHPTDNAPIH 1397
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 508 RGITGAGSPGPTPEPLRH 561
R I +GSP P P P R+
Sbjct: 1849 RNIPVSGSPEPPPPPPRN 1866
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 7.5
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Frame = +1
Query: 1 PLHAPDARVTSHQTPEAPLPTHSAPESRA---PPHHAPSIPLHP 123
P H T H PL S P + PHH P P P
Sbjct: 430 PHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETP 473
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 163 RESLRDAVEPASLADGA 113
R + ++ + P+SLADGA
Sbjct: 412 RAASKEDLSPSSLADGA 428
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 163 RESLRDAVEPASLADGA 113
R + ++ + P+SLADGA
Sbjct: 412 RAASKEDLSPSSLADGA 428
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,020
Number of Sequences: 438
Number of extensions: 4272
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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