Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30306
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.2  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      22   5.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   8.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 239 TELRHLNFGGNNKGILQVPDRGFDGCMRQI-SINGVNLDLS 358
           TELRHL+  GN   I  + +    G   Q+  +N  N+DL+
Sbjct: 513 TELRHLSLEGN--PITTLSNTSLLGAANQLEELNLKNIDLT 551


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 339 PLMLICLIQPSKPRSGTCSIPLLFPPKFKCLSSVC 235
           P   +C   P  P+     +P +FPP     S++C
Sbjct: 166 PTGFLCNNYPPLPQVPPLPLPPIFPPTMINPSAIC 200



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -3

Query: 140 FTIIVCSGCANYYQ 99
           + I  C GCA +++
Sbjct: 50  YNIFACDGCAGFFK 63


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -1

Query: 265 SEVQVSKLGMSALGELDXXXXXXXXTVREHLARNRRASNLCHLPSLYARVV 113
           S+   + LGM    E +         V E L  +   +N+  L  +YA VV
Sbjct: 230 SKQLAAALGMQTTNEKEIFERLSILPVDEFLQISEEVANIWGLKKVYAPVV 280


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 322 ADQHQRSKPGSQ*ESRIDRHGVWMP 396
           A  HQR     +    IDRH V  P
Sbjct: 320 ATDHQRRNEPKRPRPNIDRHEVTRP 344


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -3

Query: 140 FTIIVCSGCANYYQ 99
           + I  C GCA +++
Sbjct: 50  YNIFACDGCAGFFK 63


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 186 SESTWQGTGERP 151
           +ES WQ +GE P
Sbjct: 112 NESKWQDSGESP 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,060
Number of Sequences: 336
Number of extensions: 3625
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)