Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30306
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 28 1.0
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 3.1
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 27 3.1
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 26 5.4
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch... 25 7.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 7.2
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 7.2
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 7.2
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.2
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 335 NGVNLDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSEN 466
+GV+ LS +L S A GC+ +++ NG+ SY+ + +V EN
Sbjct: 41 SGVSCQLS-SLTSSNFASGCKISAMPILNGSMSYV-YTNVNLEN 82
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 51 QDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKC 179
+DG+ Y V N+E++ + + + KW K DAR F+ C
Sbjct: 428 EDGKFY--VFSRNSENMSVRYPDISVSVSKWKKPDARSFILDC 468
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 18 GEGGYFFSLLMQDGRVY 68
GEGGY S ++QDG V+
Sbjct: 44 GEGGYGISCVIQDGNVF 60
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 329 SINGVNLDLSENLES-IGMAYGCQFASLVSFNGTDSYLRFVDVTSENPQLTLKFKTAKPN 505
S NGV+L +LE + + Y + S + N SYL NP T+ + N
Sbjct: 20 SENGVDLGNDIDLEKGLPLKYNSENESGLPSNSASSYLI-------NPDPTMDLEAQTFN 72
Query: 506 GSYSSTSAGH 535
+ S+TS GH
Sbjct: 73 HNESTTSVGH 82
>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
Dap1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 401 ASLVSFNGTDSYLRFVDVTSENPQLTLKFKTAKPNGSYSSTSAGH 535
A L +NG+ + L F+ + +T+ K P G YS+ AGH
Sbjct: 46 AELKEYNGSKNSLVFLAIKGTVYNVTMGSKFYGPQGPYSA-FAGH 89
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 96 DLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKXESNSPSADIPS 245
+ ++ G TRA D WH+ + LA CS +D+ V + SP + S
Sbjct: 315 EFMLHGHTRAVTDMNWHRQNP-DVLATCS--IDSSVHCWDLRSPRFPVNS 361
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 129 CMLGLCQLLSNPLCCLMTPASKPFHLASVMRRN 31
C++G C +N + P + HL SV +N
Sbjct: 237 CLIGACTSSTNATSDAVVPVREILHLPSVQMKN 269
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 63 VYLQVSLGNTEDLII---VGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKXESNSPSA 233
VY ++SL + + L + V R N+G + + FL C +++ NEV K + A
Sbjct: 1479 VYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFLIDCFMSLYNEV-KSSISPLDA 1537
Query: 234 DIPS 245
+IP+
Sbjct: 1538 NIPN 1541
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 347 LDL-SENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSEN 466
+DL + ++++G AY L S +G+D +L TSEN
Sbjct: 702 MDLGTSEMKNVGRAYPEILEKLSSSSGSDEFLETSSRTSEN 742
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 381 MPIDSRFSLRSRFTPLML--ICLIQPSKPRSGTCSIPL 274
+P+D ++ SRF+ L+L +QP S + P+
Sbjct: 352 IPLDEKYDFSSRFSTLLLQFQAFVQPKTMTSNVSTAPI 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,112
Number of Sequences: 5004
Number of extensions: 60332
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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